Pairwise Alignments

Query, 768 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1484 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  231 bits (590), Expect = 2e-64
 Identities = 171/571 (29%), Positives = 278/571 (48%), Gaps = 27/571 (4%)

Query: 200  DITWRKITEDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGH 259
            DIT +++ ED +     +  +    + V++L  DER  +   N  A+ +LG  AD ++  
Sbjct: 921  DITTQRMLEDDVKLLAQAFAN--TSEGVLILDADERVRVS--NKAAQSILGMSADDLIDR 976

Query: 260  HIRDFYQDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLVET----G 315
            +        E  +    +LL        W  E  ++   G    V  N+  + +      
Sbjct: 977  YFAQLVHSSEDRSDEINILLEQ---GITWTGEHEFQCAEGLICPVWLNLSTMKDDRGNIS 1033

Query: 316  TLLIVGEDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETDSQLRTHAMLYL 375
              + V  DITE +Q    L   A YD+LT   NR+ F   LAK +   +      A+++L
Sbjct: 1034 HYVAVFSDITERKQTEADLRRLANYDVLTGLPNRSLFAARLAKCIHRAEQTEDKLALIFL 1093

Query: 376  DLDQLKVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVL 435
            DLD+ K +ND+ GH  GD  +   AS L+  +    TL R GGDEF +L+RD  + D V 
Sbjct: 1094 DLDRFKNVNDSYGHSMGDALLVEAASRLQSCVSENHTLCRFGGDEFVILMRDMVDIDEVN 1153

Query: 436  -VAQSIIHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRN 494
             + +++I  + E  F      F ++ SIG+ +    A  P+++   AD A + AKEEGR 
Sbjct: 1154 HLCEALIRQI-EKPFELYGREFFISTSIGVSLWPDDAKQPEVLIKNADQAMYHAKEEGRG 1212

Query: 495  RFNLY--RQDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVR 552
             F  +   ++ E L   +LE E    +  A+  +  EL+ Q  + + + D ++  E L+R
Sbjct: 1213 NFQYFSAERNAEALYHLKLEAE----LRKAMDRQEFELYFQPQIDILKDDKVVGMEALLR 1268

Query: 553  IKNAAGEYVSPGIFVPASERYNLAHRLDRKIVEQTF----NWLEARPQVLDKLGRVSINL 608
              +    Y+ P IF+  +E   L   +DR +++Q       W E     L    ++S+N+
Sbjct: 1269 WHHPKEGYIRPDIFIRVAESCGLIIEIDRWVIKQACLQGAKWAEHFGDEL----KLSVNV 1324

Query: 609  SGNSIGNPDFVAFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLAL 668
            S      PDF+  + + L++S +P   +  EITE   M+ L+ A   L  L+ +G  +A+
Sbjct: 1325 SAVHFRQPDFIQDVQQALKESGMPAKMLGLEITEGVLMKELHVAKDHLKALREIGIEVAI 1384

Query: 669  DDFGSGLSSFGYLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFV 728
            DDFG+G SS  YL+   V  +KID  F+ D+  NE D+ +  SI EL + +    VAE V
Sbjct: 1385 DDFGTGYSSLAYLRSFDVSTLKIDRSFLIDIATNEADQAIASSIIELARNLKLKVVAEGV 1444

Query: 729  ENQQILEALQQIGVDYAQGYLFSRPQPIADW 759
            E Q+ LE +   G    QGY F++P  I ++
Sbjct: 1445 ETQEQLEQVFSRGCYIIQGYYFAKPMTIDEF 1475