Pairwise Alignments

Query, 768 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  284 bits (726), Expect = 2e-80
 Identities = 180/552 (32%), Positives = 301/552 (54%), Gaps = 7/552 (1%)

Query: 210 KLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGHHIRDFYQDEE 269
           ++FQ++   +   +     ++  D    +  +N  AE+LL   A+  +G ++   ++ E 
Sbjct: 300 RIFQQKERSKITLEAIAEAVILTDSWAKVIYLNPQAERLLKVKAESAVGMNLDKVFRSEP 359

Query: 270 VLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIR-PLVETGTLLIVGEDITETR 328
            L       + S   + +  +     H          N++ P  +    +IV  DIT+  
Sbjct: 360 ELNQSLFAFMASGTPTPMLSKVKFTSHTPRLMERSISNLKGPNNKIIGTVIVLRDITQEE 419

Query: 329 QLADQLAYQARYDLLTHTLNRNQFELELAKALKETDSQLRTHAMLYLDLDQLKVLNDTAG 388
            L  QL  +A +D +T  LNR  FE E  +A  E D+Q  T A+ Y DL+Q K++ND+ G
Sbjct: 420 LLKHQLRRRANFDNVTGLLNRCAFE-ERLQAFAE-DAQ--TLAICYFDLEQFKLINDSCG 475

Query: 389 HDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSIIHALSEVA 448
           H+AGD  ++  A  ++  L  +  LAR+GGDEF + L+D          + II+A+ +  
Sbjct: 476 HNAGDAMLKMVAKAIQASLEGQGLLARLGGDEFGLALKDLGVVPLAQQVKQIINAVGKQV 535

Query: 449 FVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYRQDDEDLRR 508
                  +++  S G+ +      +   +   AD AC AAK +G N+ + Y   D++L  
Sbjct: 536 MEHHGCHYHVGISAGVALARAPYINALELLKDADIACIAAKRKGSNQVHFYDDKDKELTY 595

Query: 509 RQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEYVSPGIFVP 568
           ++   +    +  A+ +  + L+ Q I  L  P      EVL+RI+   G  ++P  F+ 
Sbjct: 596 QRNAPKWAVRIAQAIEHNELLLYYQPIKALG-PQGKQRMEVLLRIQEPCGRILAPAQFIA 654

Query: 569 ASERYNLAHRLDRKIVEQTFNWLEARPQVLDKLGRVSINLSGNSIGNPDFVAFLLERLRD 628
           A+ER+ L   +D++++ +TF WL    ++      +SINLS NS+G    V +++ +L  
Sbjct: 655 AAERFKLMTDVDKEVIRKTFLWLSLHEELWAD-HCLSINLSANSLGAEGMVDYIIAQLER 713

Query: 629 SRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFGYLQKLPVDI 688
             IP   +CFEITET+A++N N+A+++L+QLK  G   ALDDFG+G +S+GYL++LPV+ 
Sbjct: 714 FAIPSQCICFEITETSAIQNRNRAMEMLNQLKKQGFSFALDDFGTGFASYGYLRELPVNY 773

Query: 689 VKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQIGVDYAQGY 748
           VKIDG F+  +  N  D  +V+SIH++ + MG  TVAEFVENQ+I+E L+ IG++YAQGY
Sbjct: 774 VKIDGCFIKSLASNAKDYAIVKSIHDVCRVMGIETVAEFVENQEIIERLKSIGINYAQGY 833

Query: 749 LFSRPQPIADWV 760
              RP+ +  ++
Sbjct: 834 AIGRPKSLDQYL 845