Pairwise Alignments

Query, 768 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 728 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  335 bits (859), Expect = 5e-96
 Identities = 202/555 (36%), Positives = 314/555 (56%), Gaps = 13/555 (2%)

Query: 205 KITEDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGHHIRDF 264
           +I  D L   E   R  ++Q P+    LD++N +  +N  A Q L     V  G+ +   
Sbjct: 171 RIAHDMLAS-ENKYREVFNQLPLACALLDKQNQLMMLNKIALQTL----PVQHGYDLFSM 225

Query: 265 YQDEE--VLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV-ETGTLLIVG 321
            ++EE  +LT    ++       +     +  +HH     W+R +   +  +  TL+++ 
Sbjct: 226 VREEEHAMLTDTLHMVREGVLGQAWCELPLKSQHHLD---WLRLSFSQIYGDKDTLVMIA 282

Query: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETDSQLRTHAMLYLDLDQLK 381
           ED++E  +LAD+L++ A YD LT   NR  FE  L   L   D       + ++D+DQ +
Sbjct: 283 EDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENLLHAKDDM--PTCVAFIDVDQFQ 340

Query: 382 VLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSII 441
           V+N+ +GH AGD  +   A  L+ ++     +AR+GGDEF +L+  C    A  +A+ I 
Sbjct: 341 VINNISGHQAGDKLLCQLALRLKQLVRKGDIVARLGGDEFGILMHYCNVDSAQHIAKRIC 400

Query: 442 HALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYRQ 501
             L+   F+WE+   N++ S+GI   + +A+    V + AD AC  AK++GRN ++LY  
Sbjct: 401 TQLATHEFIWENRCHNVSVSMGIAKFNRSASDIYAVMSHADAACRLAKDKGRNGWHLYST 460

Query: 502 DDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEYV 561
            D  + R   EM +   +  ALA  + EL+ Q I PLN  +  LH EVL+R+    G  V
Sbjct: 461 KDPKMTRLYTEMMASVDIVSALALNQFELYFQSIAPLNYDESGLHLEVLLRMVQPNGNIV 520

Query: 562 SPGIFVPASERYNLAHRLDRKIVEQTFNWLEARPQVLDKLGRVSINLSGNSIGNPDFVAF 621
           SP IF+PA+ERYNLA ++D  +++    W      +  +LG VS+NLS  S+G+ +F+ +
Sbjct: 521 SPAIFLPAAERYNLAAKIDLWVIDNLLKWGSNHLAIWQQLGLVSVNLSATSLGDSEFMNW 580

Query: 622 LLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFGYL 681
           L  RL        K+C EITETAA+  L+QA K++  L+ L C LALDDFG+G SSF YL
Sbjct: 581 LEMRLMTEPELVDKLCIEITETAAVSQLDQATKLIEVLRPLNCQLALDDFGAGFSSFAYL 640

Query: 682 QKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQIG 741
           ++L VD VKIDG FV ++ ++  D+ +V++I +L + MG   VAEFVE+ +I   L+ +G
Sbjct: 641 KRLNVDYVKIDGQFVINLCEDGADQAIVKAICQLGQDMGFDVVAEFVESTEIGLKLKSLG 700

Query: 742 VDYAQGYLFSRPQPI 756
           VDYAQGY  ++P P+
Sbjct: 701 VDYAQGYAINKPTPL 715