Pairwise Alignments

Query, 768 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1491 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  236 bits (603), Expect = 5e-66
 Identities = 167/575 (29%), Positives = 280/575 (48%), Gaps = 11/575 (1%)

Query: 188  TREESQILLEAQDITWRKITEDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQ 247
            T+E  ++     DIT R+  ED++    + L   ++     +L LD   +I+  NH A+ 
Sbjct: 910  TQEIERVAGIYSDITLRRQLEDEV----SLLAQAFENTSEGVLILDVDENIRVANHAAQH 965

Query: 248  LLGYPADVMLGHHIRDFYQDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVREN 307
            ++G     ++G     F Q ++ L+     LL  +  S    RE+  ++     VW+  +
Sbjct: 966  IIGSEQKSLVGLSFSQFVQMKDGLSTEVAQLL-GQETSWTGERELVGQNGLVCPVWLNVS 1024

Query: 308  IRPLVETGTL--LIVGEDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETDS 365
            +   V    +  ++V  DITE ++    L   A YD+LT   NR+ F   L ++++  + 
Sbjct: 1025 VMQSVNQNAIHYVVVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLMQSIQAAEQ 1084

Query: 366  QLRTHAMLYLDLDQLKVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLL 425
                 A+L+LDLD+ K +ND+ GH  GD  +   ++ L+  +  +  L R GGDEF +LL
Sbjct: 1085 NGEKLALLFLDLDRFKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILL 1144

Query: 426  RDCTERDAVLVAQSIIHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTAC 485
            ++  E   +      + A     F      F ++ SIGI +    A  P+     AD A 
Sbjct: 1145 KNVKELSDINHLAEQLLAQIVAPFRLFGREFYISTSIGISIWPDDAMQPEAFIKNADLAM 1204

Query: 486  HAAKEEGRNRFNLYRQDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLL 545
            + AKEEGR  F  Y  +        L +E+   +  A+  +  EL+ Q  + + + D  +
Sbjct: 1205 YHAKEEGRGNFKYYSSERNAQALYHLRLEAD--LRKAIERQEFELYYQPQIDILRGDKFI 1262

Query: 546  HFEVLVRIKNAAGEYVSPGIFVPASERYNLAHRLDRKIVE-QTFNWLEARPQVLDKLGRV 604
              E L+R ++    +V P IF+  +E   L   +DR ++     +      Q ++   ++
Sbjct: 1263 GMEALIRWQHPVDGFVRPDIFIKVAEACGLVVDIDRWVLRCACLDGARWAKQTIEPF-KM 1321

Query: 605  SINLSGNSIGNPDFVAFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGC 664
            S+N+S      PDF+  + + L  + +P S +C EITE   M+ L  A   L QL  LG 
Sbjct: 1322 SVNISAVHFRQPDFIDGVKKILDATHMPASSLCLEITEGVLMKELQVAKTHLKQLDDLGI 1381

Query: 665  VLALDDFGSGLSSFGYLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTV 724
             +A+DDFG+G SS  YL+   VD +KID  F+ D+  N  D+ +V SI EL + +  + +
Sbjct: 1382 EVAIDDFGTGYSSLAYLRNFEVDTLKIDRSFLIDIASNGADQAIVSSIIELARNLKLTVI 1441

Query: 725  AEFVENQQILEALQQIGVDYAQGYLFSRPQPIADW 759
            AE VE  + LE L   G    QGY F++P  ++D+
Sbjct: 1442 AEGVETVEQLEQLFSRGCYIVQGYYFAKPMSVSDF 1476