Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., drug resistance transporter, Bcr/CflA subfamily from Pseudomonas stutzeri RCH2

 Score =  167 bits (424), Expect = 4e-46
 Identities = 110/349 (31%), Positives = 176/349 (50%), Gaps = 9/349 (2%)

Query: 9   VSKQQMVLLTLLVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAMGVGQLFAG 68
           +S + +++L  L  F PLAID+YLPA P ++Q+F       Q ++  +   + +GQL  G
Sbjct: 1   MSLRILLILGALSAFGPLAIDMYLPAFPLLAQSFGTSVDHVQLSLAAYFIGLAIGQLVYG 60

Query: 69  PLADKYGRRTVALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAAFATVRDL 128
           PLAD+YGRR   L G++++ L++L +  A S++W++  R +Q LG CA  V A A VRDL
Sbjct: 61  PLADRYGRRGPLLIGVTLFTLASLASAFAPSMDWLIGVRFVQALGGCAGMVVARAVVRDL 120

Query: 129 FGPQRSGKMISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFALLVGLAMALRLQ 188
             P  S K+ S L   +   P LAP+ G  L   FGW + F  +T F+ +  +A+ L L 
Sbjct: 121 CDPMTSAKVFSQLMLVMGLAPILAPVAGGALLASFGWPSIFILLTLFSAMCLVAVTLWLP 180

Query: 189 ESNPY-MGSRPAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVILMERLQLS 247
           E+ P  +  +P    L +Y  + +   F+ H     L MA + AY+T +P + +E   + 
Sbjct: 181 ETYPAGLPRQPMSGALGQYLRLFRDRFFIGHVLTGALCMAGMFAYITGSPFVFIELYGVK 240

Query: 248 MNEFTFWFGVNAVINIIACMTAPKVMDKLG-----TRWSLIIGITTLMIAGSLMLVLRNQ 302
              F + FG+NA   I+      +++   G      RW      + L +   L +     
Sbjct: 241 PEHFGWLFGINAAGFILMAQVNVRLVRWRGPEFWVRRWVWFFFGSALAL---LAVAAAQP 297

Query: 303 ASALAFMLPVFLSSIGFAWILGAAAGKALAPFGDKAGTAAALLGLFQMS 351
            S    ++P+F        +L  A   A+A     AG+A+ALLG  Q +
Sbjct: 298 ESLWPLLIPLFCCVSCLGCLLPNATACAMADQRANAGSASALLGSMQFT 346