Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., inner membrane transport protein YdhC (RefSeq) from Shewanella amazonensis SB2B

 Score =  132 bits (331), Expect = 3e-35
 Identities = 107/377 (28%), Positives = 173/377 (45%), Gaps = 23/377 (6%)

Query: 17  LTLLVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAMGVGQLFAGPLADKYGR 76
           L LL +   LA D+YLPA  QI  + +   +L   T+T FL  + +GQL  G L DK+G+
Sbjct: 18  LALLSMLGFLATDMYLPAFNQIESSLNTSASLVAMTLTCFLGGLAIGQLAYGSLCDKFGK 77

Query: 77  RTVALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAAFATVRDLFGPQRSGK 136
           R   + G+ ++A+S++L    ++I    + R++Q  GAC+ +V   A V + F    + K
Sbjct: 78  RNTLMAGLGVFAVSSILLGFTENISVFFVLRVIQAFGACSAAVIWQALVMEKFDEGEARK 137

Query: 137 MISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFALLVGLAMALRLQESNPYMGS 196
           + S +   +   PALAP++G+W+++QFGWRA F  +    LL+        +ES     S
Sbjct: 138 VFSSIMPLVALSPALAPLMGAWVSEQFGWRAIFIILAIVGLLLAAMTPALAKESRTRSQS 197

Query: 197 RPAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVILME------RLQLSMNE 250
            P + K      +LK   F  + ++     A    Y+T  P ++         + LS   
Sbjct: 198 EPILVK-----NILKNRAFQNNVAIFGACSAAFFCYLTLWPAVMQHHGYAAAEIGLSFIP 252

Query: 251 FTFWFGVNAVINIIACMTAPKVMDKLGTRWSLIIGITTLMIAGSLMLVLRNQASA-LAFM 309
            T  F    ++   AC  A         +  LI G   L    SL+L L  Q  A +  +
Sbjct: 253 QTLAF----MLGGFACKKALHSHSPEAIKNMLITGFVVL----SLVLFLLTQLGAGILAV 304

Query: 310 LPVF--LSSIGFAWILGAAAGKALAPFGDKAGTAAALLGLFQMSGSGLLVGTLQRIMPEP 367
           L VF  L++I  A +       ALAPF + A  AA      Q+  + +    +  I    
Sbjct: 305 LWVFAALAAINGA-VYPLLVTDALAPFSNNATKAAGWQNFLQLGMAFIASAAVALIAHWF 363

Query: 368 QLLIGLTMWLAAPALLI 384
           +  IG  + + A  +L+
Sbjct: 364 EKAIGTGILVCAAIVLV 380