Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., Bcr/CflA subfamily drug resistance transporter (RefSeq) from Shewanella loihica PV-4

 Score =  326 bits (835), Expect = 8e-94
 Identities = 173/387 (44%), Positives = 250/387 (64%), Gaps = 8/387 (2%)

Query: 16  LLTLLVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAMGVGQLFAGPLADKYG 75
           +L L+V+ SPLAIDIYLP++P ++  F V  +  Q T+  FLFAMGVGQ+  GPLAD+YG
Sbjct: 8   ILMLMVVLSPLAIDIYLPSMPVMAAEFAVSASQVQSTLVLFLFAMGVGQVLIGPLADRYG 67

Query: 76  RRTVALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAAFATVRDLFGPQRSG 135
           RR +ALGG+ +Y  S+LLA  A   +W+ +AR+LQGL AC+TS+  F+ VRD F P+   
Sbjct: 68  RRPIALGGLLLYIASSLLAAVAMEFQWLQLARVLQGLAACSTSIVVFSAVRDCFTPKEGA 127

Query: 136 KMISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFALLVGLAMALRLQESNP-YM 194
           +  SYLNG IC IPALAP LG  L  QFGWR+ F FMT +A+++ + +  RL E+ P   
Sbjct: 128 RYYSYLNGVICVIPALAPTLGGLLALQFGWRSTFVFMTLYAIIIMIIVGYRLPETRPANT 187

Query: 195 GSRPAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVILMERLQLSMNEFTFW 254
            +   +++ SRY  VL  P F+F+A  C+  MA ILAYV+ +PV L+E + +S   F+  
Sbjct: 188 VTEGPLYRWSRYKPVLMDPHFMFYAFACMAGMAAILAYVSYSPVWLIETIGVSELTFSGL 247

Query: 255 FGVNAVINIIACMTAPKVMDKLGTRWSLIIGITTLMIAGSLMLVLR------NQASALAF 308
           FG+NA++NI AC  AP V+ KLG R ++I+ ++ ++++  L L ++        A+A  F
Sbjct: 248 FGLNALVNIGACFAAPVVIQKLGNRPTVIVALSAMLVSALLQLAVQWAGPQTGLAAAFGF 307

Query: 309 MLPVFLSSIGFAWILGAAAGKALAPFGDKAGTAAALLGLFQMSGSGLLVGTLQRI-MPEP 367
           MLP+ L  IGFA +LG A   ALA FG++AGTA A+LG  QMSG+ +L G +Q+  +  P
Sbjct: 308 MLPMMLLCIGFALLLGPATSMALAGFGERAGTATAMLGFIQMSGASILAGLVQQTSLTAP 367

Query: 368 QLLIGLTMWLAAPALLILFSPLGFRWH 394
             ++ +   LA+  L+ +       WH
Sbjct: 368 YAVVVVMGGLASLLLVAMNMSRLDTWH 394