Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., Bcr/CflA subfamily drug resistance transporter (RefSeq) from Shewanella loihica PV-4

 Score =  132 bits (331), Expect = 2e-35
 Identities = 99/378 (26%), Positives = 174/378 (46%), Gaps = 18/378 (4%)

Query: 16  LLTLLVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAMGVGQLFAGPLADKYG 75
           +L+ +V  +PLAID+YLPA+  ++ +F+      Q +++ +L    +G L  GP+AD+ G
Sbjct: 26  MLSAIVAITPLAIDMYLPAMSTLASSFNSSVTTVQQSLSLYLAGYALGMLTFGPIADRIG 85

Query: 76  RRTVALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAAFATVRDLFGPQRSG 135
           RR + L G++ + L +L      S+E  L  R LQ     A +V     +++++G + + 
Sbjct: 86  RRPLVLLGLTGFGLISLALAFVTSVEVFLGLRFLQAFIGAAATVVVPGYIKEVYG-KNTA 144

Query: 136 KMISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFA--LLVGLAMALRLQESNPY 193
           K +SY++  +   P +AP +GS + +   W   F  +  +A  LLV +   LR+      
Sbjct: 145 KGMSYVSLIMMLAPLIAPTMGSLILELGEWHLIFFILACYASLLLVLVLTKLRMPSDAQT 204

Query: 194 MGSRPAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVILMERLQLSMNEFTF 253
            G     F    YA V   P    H +  ++       Y+T++P + ME   L  + F  
Sbjct: 205 SGRSQRSF-FGAYAVVFTKPGVKLHIASGVMTSFAFFCYLTASPFVYMEVFGLDKSLFAI 263

Query: 254 WFGVNAVINIIACMTAPKVMDKLGTRWSLIIGITTLMIAGSLMLVLRNQASALAFMLPVF 313
            F  N    ++A +   +++ K G+R  L +      +AG  +L +     +  F +   
Sbjct: 264 LFSTNVGALMLANVINSRIVVKYGSRRMLKVATLLAAVAGIGLLSVNLFGLSYHFTVAAL 323

Query: 314 LSSIGFAWILGAAAGK-ALAPFGDKAGTAAALLGLFQMSGSGLLVGTL------------ 360
           +  +GF  ++   A    L  F  + GTA A++G  +  G G L G L            
Sbjct: 324 IPFMGFLGVMSVNADAIVLMKFQQETGTATAVIGTLRF-GFGALAGPLLALFYTGTAVPF 382

Query: 361 QRIMPEPQLLIGLTMWLA 378
             +M    LL+GL  +LA
Sbjct: 383 SALMLGAVLLVGLCQFLA 400