Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  326 bits (835), Expect = 8e-94
 Identities = 177/387 (45%), Positives = 247/387 (63%), Gaps = 8/387 (2%)

Query: 16  LLTLLVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAMGVGQLFAGPLADKYG 75
           +L  LVL SPLAIDIYLP++P ++  F V  +  Q T+  FLFAMGVGQ+  GPLAD+YG
Sbjct: 8   ILMSLVLLSPLAIDIYLPSMPTMAAEFAVSASEVQSTLVLFLFAMGVGQILIGPLADRYG 67

Query: 76  RRTVALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAAFATVRDLFGPQRSG 135
           RR VAL G+ +Y  S+LLA +A    W+ +AR+LQGL AC+TS+  F+ VRD + P+   
Sbjct: 68  RRPVALFGVLLYGASSLLAAAAIEFHWLQIARVLQGLAACSTSIVVFSAVRDCYSPKEGA 127

Query: 136 KMISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFALLVGLAMALRLQESNP-YM 194
           K+ SYLNGAIC IPALAP LG  L  QFGWR+ F FMT +A+L+ L +  RL E+ P   
Sbjct: 128 KIYSYLNGAICVIPALAPTLGGLLAMQFGWRSTFVFMTLYAILMMLLVGYRLPETRPANT 187

Query: 195 GSRPAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVILMERLQLSMNEFTFW 254
            S   +++ SRY  VL    FLF+A  C+ AMA IL+YV+ +PV L+  L +S   F+  
Sbjct: 188 VSTGPLYRWSRYKPVLSNTHFLFYAFACMSAMAAILSYVSYSPVWLIGHLGVSELAFSGL 247

Query: 255 FGVNAVINIIACMTAPKVMDKLGTRWSLIIGITTLMIAGSLMLVLR------NQASALAF 308
           FG+NA++NI+AC  AP V+ KLG R + I+ +  L+++   ++  +        A+A AF
Sbjct: 248 FGLNALVNIVACFAAPVVIRKLGNRPTAILALALLVLSAVFIIAAQAFGPSAGMAAAFAF 307

Query: 309 MLPVFLSSIGFAWILGAAAGKALAPFGDKAGTAAALLGLFQMSGSGLLVGTLQRIMPEPQ 368
           MLP+ L  IGFA++LG A   AL+ FG++AGTA A+LG  QMSG+ ++ G +Q+      
Sbjct: 308 MLPMMLLCIGFAFLLGPATSMALSAFGERAGTATAMLGFIQMSGASVIAGLVQQTNLTAP 367

Query: 369 LLIGLTMWLAAPALLILFSPLGF-RWH 394
             + L M   +  LL + +   F  WH
Sbjct: 368 YAVALVMGFFSIGLLSMMAISRFDHWH 394