Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., transporter, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  162 bits (411), Expect = 1e-44
 Identities = 113/383 (29%), Positives = 195/383 (50%), Gaps = 30/383 (7%)

Query: 20  LVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAMGVGQLFAGPLADKYGRRTV 79
           LVL  P  ID+YL  LPQI+       A      + +L  M    LFAG LAD+ GR+ +
Sbjct: 11  LVLMYPTGIDMYLVGLPQIASQLGASEAQLHIAFSVYLAGMATTMLFAGSLADRIGRKPI 70

Query: 80  ALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAAFATVRDLFGPQRSGKMIS 139
            L G  ++AL++  A  +Q+ +  L+AR  QG+GA    V AFA +RD+   +R  K++S
Sbjct: 71  TLFGALLFALASYFAAGSQTSDLFLIARFAQGIGAGCCYVVAFAILRDVLDDKRRAKVLS 130

Query: 140 YLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFALLVGLAMALRLQESNP----YMG 195
            +NG  C IP +AP++G  +  +F W + F  M    LLV     L L+E++     +  
Sbjct: 131 MVNGVTCIIPVIAPVIGHLIMLKFPWPSLFYTMAAMGLLVFALCLLVLRETHSKAAFHTQ 190

Query: 196 SRPAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVILMERLQLSMNEFTFWF 255
           + P V + S      K   F+    +  L +  IL+YV  +P+++M ++     +++   
Sbjct: 191 ALPGVQRES-----FKQGFFISRLVITTLGVTTILSYVNVSPMLIMGQMGFDRGQYSNTM 245

Query: 256 GVNAVINIIACMTAPKVMDKLGTRWSLIIGITTLMIAGSLMLVL------RNQASALAFM 309
            + A+++++A  + P ++++   + SLI+    L +A +L+ +L       +  + L F 
Sbjct: 246 AMMALVSMLASFSTPFLLNRFKEK-SLILFSQGLFVAAALVFILTQLGGVSHSFNLLGFA 304

Query: 310 LPVFLSSIGFAWILGAAAGKALAPFGDKAGTAAALLGLFQMSGSGL---LVGTLQ----- 361
                 SIGF    G    +AL+PF  +AG A++LLG+ Q+  S L   ++G L+     
Sbjct: 305 FVCSGFSIGF----GVTMSQALSPFVARAGVASSLLGIAQVCTSALYIWVMGLLEVSAIN 360

Query: 362 --RIMPEPQLLIGLTMWLAAPAL 382
              ++     L+ +T+ LA P +
Sbjct: 361 ILLLILSVGALVSITLMLAVPKM 383