Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  117 bits (294), Expect = 5e-31
 Identities = 86/343 (25%), Positives = 157/343 (45%), Gaps = 11/343 (3%)

Query: 14  MVLLTLLVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAMGVGQLFAGPLADK 73
           ++ L LL +   +A D+YLPA   I  + +   +    ++T FL  + +GQL  GPL  K
Sbjct: 17  LLYLALLSMLGFIATDMYLPAFKAIESSLNSSPSQVAMSLTCFLAGLALGQLIYGPLVSK 76

Query: 74  YGRRTVALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAAFATVRDLFGPQR 133
            G+R   L G++++ALS++   ++ S+  + +AR  Q +GAC+  V   A V + +  ++
Sbjct: 77  LGKRYALLIGLAVFALSSVAIANSDSVMMLNIARFFQAIGACSAGVIWQAIVVEQYDAEK 136

Query: 134 SGKMISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFALLVGLAMALRLQESNPY 193
           +  + S +   +   PALAPILG+++  +FGWRA F  +   A L+ L     +   + +
Sbjct: 137 AQGIFSNIMPLVALSPALAPILGAYILNEFGWRAIFISLCVIAFLLVLMTLYFVPGKSKH 196

Query: 194 MGSRPAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVILMERLQLSMNEFTF 253
              +P+      Y  +LK   +L +  +         AY+T  P++ ME+      E   
Sbjct: 197 QDIKPSAVS---YGQILKNTRYLGNVVIFGACSGAFFAYLTVWPIV-MEQHGYQATEIGL 252

Query: 254 WFGVNAVINIIACMTAPKVMDKLGTRWSL-----IIGITTLMIAGSLMLVLRNQASALAF 308
            F    ++ I+    +  ++ ++G   +L     I GI  + I   L  +L    +    
Sbjct: 253 SFIPQTIMFIVGGYASKLLIKRIGADKTLNVLLSIFGICVVSIV--LFTLLFKTITIFPL 310

Query: 309 MLPVFLSSIGFAWILGAAAGKALAPFGDKAGTAAALLGLFQMS 351
           ++   + +     I       AL  F   A  AA L    Q++
Sbjct: 311 LISFSILAAANGAIYPIVVNSALQQFTQHASKAAGLQNFLQIT 353