Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., bicyclomycin resistance protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  128 bits (322), Expect = 3e-34
 Identities = 91/347 (26%), Positives = 167/347 (48%), Gaps = 4/347 (1%)

Query: 16  LLTLLVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAMGVGQLFAGPLADKYG 75
           +L  +V  +PLAID+YLPA+  ++ +F+ +  L Q +++ +L    +G L  GPLAD+ G
Sbjct: 24  MLAAIVAITPLAIDMYLPAMATLAHSFNTDIILVQQSLSVYLGGYALGMLCFGPLADRLG 83

Query: 76  RRTVALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAAFATVRDLFGPQRSG 135
           RR + + G++ + L + L   A+ I   L  R LQ     A +V     +++++G + + 
Sbjct: 84  RRPMVIMGLTGFMLISFLLGLAEQINVFLGLRFLQAFIGAAATVVVPGYIKEVYG-ENTA 142

Query: 136 KMISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFALLVGLAMALRLQ-ESNPYM 194
           K +SY++  +   P LAP +GS + +   W   F   + + LL+ L + + L+  S+   
Sbjct: 143 KGMSYVSLIMMLAPLLAPTIGSLILELGDWHLIFFIQSAYTLLLLLLVIILLRMPSDKDK 202

Query: 195 GSRPAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVILMERLQLSMNEFTFW 254
            SR     L  YA V   P    + +  +L       Y+T++P + ME   L  + F   
Sbjct: 203 SSRSQKSFLGAYATVFSRPGVKMNIASGVLTSFAFFCYLTASPFVYMEVFSLDKSLFALL 262

Query: 255 FGVNAVINIIACMTAPKVMDKLGTRWSLIIGITTLMIAGSLMLVLRNQASALAFMLPVFL 314
           F  N    ++A +   +++ + G+   L +      +A + +L +     +  F + + +
Sbjct: 263 FSTNVGALMLANIINTRIVGRYGSLRMLHVSTFLGALAAAGLLGVNLLGLSYHFTVLMLI 322

Query: 315 SSIGFAWILGAAAGK-ALAPFGDKAGTAAALLGLFQMSGSGLLVGTL 360
             +G   I+   A    L  F  + GTA A++G  +  G G L G L
Sbjct: 323 PLMGSLGIMSVNADAIVLMKFKQETGTATAVIGTLRF-GFGALAGPL 368