Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., multidrug efflux system protein MdtL (RefSeq) from Shewanella sp. ANA-3

 Score =  159 bits (403), Expect = 1e-43
 Identities = 117/379 (30%), Positives = 189/379 (49%), Gaps = 22/379 (5%)

Query: 20  LVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAMGVGQLFAGPLADKYGRRTV 79
           LVL  P  ID+YL  LPQI+       A      + +L  M    LFAG LAD+ GR+ +
Sbjct: 11  LVLMYPTGIDMYLVGLPQIANQLGATEAQLHIAFSVYLAGMATTMLFAGSLADRIGRKPI 70

Query: 80  ALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAAFATVRDLFGPQRSGKMIS 139
            L    ++AL++  A  +QS +  L+AR +QG+GA    V AFA +RD    +R  K++S
Sbjct: 71  TLFSALLFALASYFAARSQSSDLFLVARFVQGVGAGCCYVVAFAILRDALDDKRRAKVLS 130

Query: 140 YLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFALLV-GLAM-ALRLQESNPYMGSR 197
            +NG  C IP +AP++G  +  +F W + F  M    LLV GL +  LR   S     S+
Sbjct: 131 MVNGVTCIIPVIAPVIGHLIMLRFPWPSLFYTMAVMGLLVFGLCLFVLRETYSKASFHSQ 190

Query: 198 --PAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVILMERLQLSMNEFTFWF 255
             P V   S      K   F+    +  L +  IL+YV  +P+++M ++     +++   
Sbjct: 191 TLPRVQTES-----FKQGFFISRVVITTLGVTTILSYVNVSPMLIMGQMGFDRGQYSNTM 245

Query: 256 GVNAVINIIACMTAPKVMDKLGTRWSLIIGITTLMIAGSLMLVLRNQA--SALAFMLPVF 313
            + A+++++A  + P ++++   + SLI+   TL  A +L+ +L        L  +L   
Sbjct: 246 AMTALVSMLASFSTPFLLNQFKEK-SLILFSQTLFAAAALVFILTQLGWLGQLFNLLGFG 304

Query: 314 LSSIGFAWILGAAAGKALAPFGDKAGTAAALLGLFQMSGSGLLVGTLQRI---------- 363
           L   GFA   G    +AL+PF  +AG A++LLG+ Q+  S L +  +  +          
Sbjct: 305 LVCSGFAIGFGVTMSQALSPFVARAGVASSLLGIAQVCTSALYIWVMGLLEVSAINILLA 364

Query: 364 MPEPQLLIGLTMWLAAPAL 382
           +     LI +T+ LA P L
Sbjct: 365 ILAVGALISITLMLAVPKL 383