Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., inner membrane transport protein YdhC (RefSeq) from Shewanella sp. ANA-3

 Score =  118 bits (296), Expect = 3e-31
 Identities = 90/339 (26%), Positives = 157/339 (46%), Gaps = 9/339 (2%)

Query: 17  LTLLVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAMGVGQLFAGPLADKYGR 76
           L LL +   +A D+YLPA   I  +F+   +    ++T FL  + +GQL  GPL  K G+
Sbjct: 20  LALLSMLGFIATDMYLPAFKAIESSFNSTPSQVAMSLTCFLAGLALGQLIYGPLVSKLGK 79

Query: 77  RTVALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAAFATVRDLFGPQRSGK 136
           R   + G+ I+AL+++   ++ SI  + +AR  Q +GAC+  V   A V + +  +++  
Sbjct: 80  RYALILGLGIFALASVAIANSDSILMLNIARFFQAVGACSAGVIWQAIVVEQYDAEKAQG 139

Query: 137 MISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFALLVGLAMALRLQESNPYMGS 196
           + S +   +   PALAPILG+++   FGWRA F  +   A L+ L     +     +  +
Sbjct: 140 IFSNIMPLVALSPALAPILGAYILNDFGWRAIFISLCVIAFLLVLMTLYFVPSHAEHQDT 199

Query: 197 RPAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVILMERLQLSMNEFTFWFG 256
           RP+      Y  +LK   +L +  +         AY+T  P++ ME+      E    F 
Sbjct: 200 RPSAVS---YGQILKNTRYLGNVVIFGACSGAFFAYLTVWPIV-MEQHGYQATEIGLSFI 255

Query: 257 VNAVINIIACMTAPKVMDKLGTRWSL--IIGITTLMIAGSLMLVLRNQASALAFMLPVFL 314
              ++ I+    +  ++ ++G   +L  ++ I  L +   +   L  +A  + F L +  
Sbjct: 256 PQTIMFIVGGYASKLLIKRIGADRTLNVLLAIFGLCVISIVFFTLLMKAETI-FPLLISF 314

Query: 315 SSIGFA--WILGAAAGKALAPFGDKAGTAAALLGLFQMS 351
           S +  A   I       AL  F   A  AA L    Q++
Sbjct: 315 SILAAANGAIYPIVVNSALQQFTQNAAKAAGLQNFLQIT 353