Pairwise Alignments

Query, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., multidrug resistance protein D (RefSeq) from Shewanella sp. ANA-3

 Score =  135 bits (341), Expect = 2e-36
 Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 11/383 (2%)

Query: 12  QQMVLLTLLVLFSPLAIDIYLPALPQISQAFHVEHALAQDTITWFLFAMGVGQLFAGPLA 71
           Q + +L  +V    +A  I++PALP I+Q   V+ +  Q  +  +L A G+ Q   GPL+
Sbjct: 24  QLLFMLVFMVACGQMAQTIFVPALPLIAQGLAVDASKLQAVMACYLLAYGLCQFIYGPLS 83

Query: 72  DKYGRRTVALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAAFATVRDLFGP 131
           D+ GR+   L GI I+ L AL+A  A S   ++ A LLQGLG  +      +  RD +  
Sbjct: 84  DRVGRKMPLLIGIGIFILGALMAAEATSFNQLIFASLLQGLGTASAGALCRSIPRDHYFG 143

Query: 132 QRSGKMISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFALLVGLAMALRLQESN 191
               +  SY++ A+ F+P +AP LGS+ +  +G +A +  + GF  LV L +    +ES 
Sbjct: 144 DNLVRFNSYVSMAVVFLPLVAPFLGSFASAYWGVQAVYWVLFGFGSLVWLLLCFGFKESL 203

Query: 192 PYMGSRPAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAPVILMERLQLSMNEF 251
           P    R     L+ Y  VL+  +F  +    +   A I A+   A V+  + LQLS    
Sbjct: 204 P-KHKREQQPILASYRHVLRHRSFRAYLLSLIATFAGIAAFEAIAGVLYGQYLQLSPFMV 262

Query: 252 TFWFGVNAVINIIACMTAPKVMDKLGTRWSLIIGITTLMIAGSLMLVLRNQASAL---AF 308
           + +F       ++  + A +      T    ++    L+ AG+L +++      +   + 
Sbjct: 263 SCYFVAPIPGYLLGALIAGRQKQAQRT----VLQGVALLGAGALFMLIPGIFQLVVGWSL 318

Query: 309 MLPVFLSSIGFAWILGAAAGKALAPFGDKAGTAAALLGLFQMSGSGLLVGTLQRIMPEPQ 368
           ++   L   G   +       AL PF  +AG A ALLG  Q  G+GL   T+  +    Q
Sbjct: 319 LIGSILFFSGAGMLFPTLTSAALEPFPRQAGIAGALLGGLQNFGAGLAALTMSLVPMGGQ 378

Query: 369 LLIGLTMWLAAPALLILFSPLGF 391
           L IGL   L+A  +L++   L +
Sbjct: 379 LSIGL---LSALMVLLVIVALHY 398