Pairwise Alignments

Query, 327 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  147 bits (372), Expect = 2e-40
 Identities = 101/310 (32%), Positives = 150/310 (48%), Gaps = 30/310 (9%)

Query: 19  KLARIDLNLLVCLKVLIEELSVTRAAARLCLSQSAVSKSLAKLREQFDDPLFVRTSYGLN 78
           +L  +DLNL V    +  E ++TRAA RLC++Q AVS +L++LR   +DPLF+R      
Sbjct: 2   RLQNVDLNLFVVFDAIYTERNLTRAAERLCITQPAVSNALSRLRTSLNDPLFIR------ 55

Query: 79  ATPKALFLKPKLDVLVNQ----LELLTQPAH----FSPQSSEYRFQIAAVESVYPLIMPY 130
            TPKA+   P  + ++ Q    L+LL+   H    F P  +E+ FQ+   +     ++P 
Sbjct: 56  -TPKAMMPTPVAENMIGQVREALKLLSSSMHLGDSFDPLLAEHHFQLGMFDVTEETMLPS 114

Query: 131 FLPTIFRHGPHLSISTHAWT-EQTFRKLQVGELDFGLTGKDIDINDAKLTLLPPADICEQ 189
            L  +  H P LSIS++  + E+  ++   G LD  +        DA +   P  D+   
Sbjct: 115 LLAALQVHAPRLSISSYPVSREEMLKEFVSGRLDLAI--------DAPIVTHP--DLYHH 164

Query: 190 EIYRDNQRCVVRRGHPVLQYDWNLSSYLNLRHVQVRCDGNDRWLLDYRLADLGYERDIAI 249
            +      C+VR+ HP +    +L  YL L HV V         +D  L  LG  R+I +
Sbjct: 165 PLVTVPYVCLVRKDHPEVGDTLSLEQYLALSHVHVSSRRQGVGYVDAALNRLGKHRNIQV 224

Query: 250 TVPDFNSAASLCTYTDFIFTAPSHFTHWVAKQMDLVELPLPMEFPPMAYTLFWHREREND 309
                 +A  L   T+   T P      +AK  DL  L LP E  P+ + L+WHR  + D
Sbjct: 225 RTKHHQAAPKLVAETNLATTVPES----LAKNTDLKVLKLPFEVEPIEWHLYWHRSADQD 280

Query: 310 PALRWLRELI 319
            A RWLRE I
Sbjct: 281 NANRWLREFI 290