Pairwise Alignments

Query, 645 a.a., phosphomethylpyrimidine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 917 a.a., phosphomethylpyrimidine synthase ThiC from Bifidobacterium breve UCC2003

 Score =  679 bits (1753), Expect = 0.0
 Identities = 364/639 (56%), Positives = 424/639 (66%), Gaps = 79/639 (12%)

Query: 29  SYLLGSRPDIRVPVREITLSDTLVGGSKDAPIFEPNEPICVYDTSGVYTDPSHDIDLYKG 88
           +Y  GS  D+ VP  EI LSDT        P   PN P   Y T G   DP       +G
Sbjct: 321 TYQYGSY-DLEVPYTEIKLSDT--------PGVGPNPPFHDYSTEGPKCDPK------EG 365

Query: 89  LPKLREEWIEERRDTHILPSMSSHFARERLADETLDELRYGHLPRIRRAMGQ-------H 141
           L  LR +WI +R D            R  L D+    ++ G   +  R           H
Sbjct: 366 LKPLRLDWIRDRGDIEDYEGR-----RRNLEDDGKRAIKRGRATKEWRGRKHQPMRAKDH 420

Query: 142 RVTQLHYARQGIITPEMEFVAIRENSRRLAHQDPSLLQQHAGQNFGAHLPDLITPEFVRR 201
            +TQ+ YAR GIITPEM++VA REN                              E VR 
Sbjct: 421 PITQMWYARHGIITPEMQYVATRENC---------------------------DVELVRS 453

Query: 202 EIAEGRAIIPCNINHPESEPMIIGRNFLVKVNANIGNSSVSSSIEEEVEKLVWATRWGAD 261
           E+A GRA++PCNINHPE+EPMIIG  FL K+NAN+GNS+V+SSI+EEVEKL WAT+WGAD
Sbjct: 454 ELAAGRAVMPCNINHPEAEPMIIGSAFLTKLNANMGNSAVTSSIDEEVEKLTWATKWGAD 513

Query: 262 TVMDLSTGRNIHETREWILRNSPVPIGTVPMYQALEKVNGVAENLTWEVMRDTLLEQAEQ 321
           TVMDLSTG +IH TREWILRNSPVPIGTVPMYQALEKV   A  L+WE+ RDT++EQ EQ
Sbjct: 514 TVMDLSTGNDIHTTREWILRNSPVPIGTVPMYQALEKVEDDASKLSWELFRDTVIEQCEQ 573

Query: 322 GVDYFTIHAGLLLRYVPMTAKRVTGIVSRGGSIIAKWCLSHHQENFLYTHFREICEICAQ 381
           GVDY TIHAG+LLRYVP+TA RVTGIVSRGGSI+A WCL HHQE+FLYTHF E+C+I A+
Sbjct: 574 GVDYMTIHAGVLLRYVPLTANRVTGIVSRGGSIMADWCLRHHQESFLYTHFDELCDIFAK 633

Query: 382 YDVALSLGDGLRPGSIADANDEAQFAELRTLGELTQIAWEYDVQVMIEGPGHVPMHLIKA 441
           YDVA SLGDGLRPGS+ADAND AQ +EL TLGELT+ AW  DVQVMIEGPGHVP   ++ 
Sbjct: 634 YDVAFSLGDGLRPGSLADANDAAQLSELMTLGELTERAWAKDVQVMIEGPGHVPFDTVRM 693

Query: 442 NMDEQLKHCHEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGCAMLCYVTPKEHLGLP 501
           N++ +   CH APFYTLGPLTTD APGYDHITS IGA  IG +G AMLCYVTPKEHLGLP
Sbjct: 694 NIELEKAVCHNAPFYTLGPLTTDTAPGYDHITSAIGATEIGRYGTAMLCYVTPKEHLGLP 753

Query: 502 NKEDVKTGLITYKLAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLALDPVTARAF 561
           NK+DVK G+I YK+A HAAD+AK HP AQ RD+A+SKARFEFRW DQFNL+ DP TA AF
Sbjct: 754 NKDDVKQGVIAYKIACHAADIAKHHPHAQDRDDAISKARFEFRWLDQFNLSYDPDTAIAF 813

Query: 562 HDETLPQESGKVAHFCSMCGPKFCSMKISQEVR-----DYANNQ---------------- 600
           HDETLP E  K+AHFCSMCGPKFCSM ISQ +R     + A  Q                
Sbjct: 814 HDETLPAEPAKMAHFCSMCGPKFCSMAISQNIRKAFGGEAAQQQIVKEAAAGIDSEALAK 873

Query: 601 ---TLDTTVIDL-VMPAESIQLAMQDKSREFLASGAELY 635
               +D  V+   V+  E I   M   S ++ A G +LY
Sbjct: 874 AKANVDNDVVSANVLSPEEILAGMDAMSEKYTAQGGKLY 912