Pairwise Alignments

Query, 278 a.a., shikimate dehydrogenase from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., shikimate 5-dehydrogenase (RefSeq) from Shewanella loihica PV-4

 Score =  311 bits (797), Expect = 1e-89
 Identities = 156/275 (56%), Positives = 196/275 (71%), Gaps = 1/275 (0%)

Query: 1   MASQI-DQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGG 59
           M  Q+ D+YAVFG+PI HSKSP IH  FA+ T +S+ Y A   P+DGF E+ + FF  GG
Sbjct: 26  MTQQVQDRYAVFGHPIGHSKSPAIHQAFAKSTGESLQYEAILAPLDGFAESLRAFFEHGG 85

Query: 60  RGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQQV 119
           +G NVT+PFKE+AY   D L + A+LAGAVNTL +L DG I GDNTDG GLV DL     
Sbjct: 86  KGANVTLPFKEQAYALCDCLGDEAKLAGAVNTLTRLADGRIKGDNTDGLGLVADLERHLG 145

Query: 120 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE 179
            L G ++LLIGAGGAARG + PLL+    S+T+ NRT +KAEQLAE   AYG+VKA   +
Sbjct: 146 SLCGKSVLLIGAGGAARGAILPLLNAGIDSLTIHNRTHSKAEQLAEAFKAYGQVKASTLD 205

Query: 180 QLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCAQAI 239
           +L  S+D++INSTSASL GELP++   I ++ SVCYDMMYG+  T FN WA   G +Q I
Sbjct: 206 ELTHSFDIVINSTSASLSGELPSLPKAIIAAHSVCYDMMYGRELTAFNHWALDQGASQTI 265

Query: 240 DGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNL 274
           DGLGMLVGQAA+SF +WRG+ P  + +L +LR  L
Sbjct: 266 DGLGMLVGQAAKSFAIWRGVEPAVEPVLAKLRSEL 300