Pairwise Alignments

Query, 278 a.a., shikimate dehydrogenase from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., shikimate 5-dehydrogenase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  284 bits (726), Expect = 2e-81
 Identities = 146/277 (52%), Positives = 188/277 (67%), Gaps = 6/277 (2%)

Query: 5   IDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNV 64
           +D+YAVFG+PI HSKSPFIH  FA  TQ+S+ Y A   P+DGF  + K FF+ GG+G NV
Sbjct: 8   VDRYAVFGHPIGHSKSPFIHGQFAALTQESLTYEAILAPIDGFEASLKSFFSSGGKGANV 67

Query: 65  TVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDLLAQQVLLKGA 124
           TVPFKE+A+   D L+  A LAGAVNTL  L DG I GDNTDG GLV DL++    L+  
Sbjct: 68  TVPFKEQAFALCDSLSAEAALAGAVNTLSLLADGSIRGDNTDGLGLVADLISHLGSLQHK 127

Query: 125 TILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGE------VKAQAF 178
            +LL+GAGGAARG + PLL+     + +TNRT  KA+ L ++ +   E      ++A + 
Sbjct: 128 RVLLVGAGGAARGCILPLLNAGVGQLVITNRTQTKAKDLVDIFSQLEEGIYKDKLQALSM 187

Query: 179 EQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYTVFNQWARQHGCAQA 238
            +L   ++++INSTSASL GELP +   I  S +VCYDMMYG   T FNQWA Q G A+ 
Sbjct: 188 SELTGEFELVINSTSASLAGELPPLPQSIIGSTTVCYDMMYGAMPTAFNQWALQQGAAKV 247

Query: 239 IDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNLE 275
           IDGLGMLVGQAA+SF LWR + P T  +L+ LR+ L+
Sbjct: 248 IDGLGMLVGQAAKSFALWRTVEPDTAVVLKLLREKLQ 284