Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 870 a.a., DNA topoisomerase I (EC 5.99.1.2) from Pseudomonas fluorescens FW300-N2E2

 Score = 45.1 bits (105), Expect = 4e-09
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 21  SSPCPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQNDGHI------IKELGVPCPEC 74
           S  C +CG+ +QL+ G+ G F GCT  P C   + L ++          +K   + C + 
Sbjct: 712 SLECDKCGSEMQLKTGRFGKFFGCT-NPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKV 770

Query: 75  GHELVLRQGRYGMFIGCSHYPQ 96
               +LR G  G+F+  S +P+
Sbjct: 771 NDTYILRDGASGLFLAASQFPK 792



 Score = 40.8 bits (94), Expect = 7e-08
 Identities = 40/152 (26%), Positives = 58/152 (38%), Gaps = 23/152 (15%)

Query: 14  AHEHALQSSPCPQCGAALQLRHGKHGPFLGCTAY-----PECDYIKPLHQNDGHIIKELG 68
           A++  +   PC  CG  +Q+R    G FLGC+ Y       C     L   D     + G
Sbjct: 594 ANQPVMTDIPCLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEG 653

Query: 69  VP----------CPEC--GHELVLRQGRYGMFIGCSHYPQC--HHIESMDSPSQEETSPD 114
                       CP C    +  L   +  + I C + P C  + IE      +    P 
Sbjct: 654 ESESLVLRGKHRCPICSTAMDAYLLDEKRKLHI-CGNNPDCAGYEIEEGTYRIKGYEGPS 712

Query: 115 ILCPECGKGHLIERKSRFGKLFYACDAYPKCK 146
           + C +CG   +  +  RFGK F+ C   P CK
Sbjct: 713 LECDKCG-SEMQLKTGRFGK-FFGC-TNPTCK 741



 Score = 38.1 bits (87), Expect = 4e-07
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 10/81 (12%)

Query: 71  CPECGHELVLRQGRYGMFIGCSHYPQCHH----IESMDS--PSQEETS-PDILCPECGKG 123
           C +CG E+ L+ GR+G F GC++ P C +    ++S D+  P  +    P++ C +    
Sbjct: 715 CDKCGSEMQLKTGRFGKFFGCTN-PTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDT 773

Query: 124 HLIERKSRFGKLFYACDAYPK 144
           +++  +     LF A   +PK
Sbjct: 774 YIL--RDGASGLFLAASQFPK 792