Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 175 a.a., DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster from Pseudomonas fluorescens FW300-N2E2

 Score = 44.3 bits (103), Expect = 1e-09
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 17  HALQSSPCPQCGAALQLRHGKHGPFLGCTAYPECDYIKPL 56
           H+     CP CGA ++ R GKH  F  CT YPEC    P+
Sbjct: 115 HSPGGPSCPLCGAPMRQRDGKHNKFWSCTRYPECRGALPI 154



 Score = 35.0 bits (79), Expect = 8e-07
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 68  GVPCPECGHELVLRQGRYGMFIGCSHYPQCHHIESMDSPSQEETSP 113
           G  CP CG  +  R G++  F  C+ YP+C    ++   SQ   SP
Sbjct: 119 GPSCPLCGAPMRQRDGKHNKFWSCTRYPECR--GALPIASQGRVSP 162



 Score = 28.1 bits (61), Expect = 9e-05
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 117 CPECGKGHLIERKSRFGKLFYACDAYPKCKFALNSKPIA 155
           CP CG   + +R  +  K F++C  YP+C+ AL   PIA
Sbjct: 122 CPLCG-APMRQRDGKHNK-FWSCTRYPECRGAL---PIA 155