Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

 Score = 46.2 bits (108), Expect = 2e-09
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)

Query: 21  SSPCPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQNDG------HIIKELGVPCPEC 74
           S  C +CG+ +QL+ G+ G F GCT   EC   + L +N          +K   + C + 
Sbjct: 709 SLECDKCGSEMQLKTGRFGKFFGCT-NAECKNTRKLLKNGEAAPPKMDAVKMPELKCEKV 767

Query: 75  GHELVLRQGRYGMFIGCSHYPQ 96
               VLR G  G+F+  S +P+
Sbjct: 768 DDTYVLRDGASGLFLAASQFPK 789



 Score = 38.5 bits (88), Expect = 3e-07
 Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 23/152 (15%)

Query: 14  AHEHALQSSPCPQCGAALQLRHGKHGPFLGCTAY-----PECDYIKPLHQNDGHIIKELG 68
           A++  L   PC  CG  + +R    G FLGC+ Y       C     L   D     + G
Sbjct: 591 ANQPTLTDIPCKVCGRPMMIRTASTGVFLGCSGYSLPPKERCKSTVNLVPGDEIAADDEG 650

Query: 69  VP----------CPEC--GHELVLRQGRYGMFIGCSHYPQC--HHIESMDSPSQEETSPD 114
                       CP C    +  L      + I C + P C  + IE      +    P 
Sbjct: 651 ESESRVLLGKHRCPICSTAMDAYLLDETQKLHI-CGNNPDCSGYEIEKGQYRIKGYEGPS 709

Query: 115 ILCPECGKGHLIERKSRFGKLFYACDAYPKCK 146
           + C +CG   +  +  RFGK F   +A  +CK
Sbjct: 710 LECDKCG-SEMQLKTGRFGKFFGCTNA--ECK 738



 Score = 34.7 bits (78), Expect = 5e-06
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 71  CPECGHELVLRQGRYGMFIGCSHYPQCHHI-------ESMDSPSQEETSPDILCPECGKG 123
           C +CG E+ L+ GR+G F GC++  +C +        E+          P++ C +    
Sbjct: 712 CDKCGSEMQLKTGRFGKFFGCTN-AECKNTRKLLKNGEAAPPKMDAVKMPELKCEKVDDT 770

Query: 124 HLIERKSRFGKLFYACDAYPK 144
           +++  +     LF A   +PK
Sbjct: 771 YVL--RDGASGLFLAASQFPK 789