Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 269 a.a., NERD domain-containing protein from Synechocystis sp000284455 PCC 6803

 Score = 42.0 bits (97), Expect = 1e-08
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 93  HYPQCHHIESMDSPSQEETSPDILCPECGKGHLIERKSR----FGKLFYACDAYPKCKFA 148
           H      +++    + E T+P+  CP+CGK +++ RKS+     G+ F+ C +YP+C+  
Sbjct: 188 HRKHIQKVKNQYQNADENTAPE--CPKCGK-NMVLRKSKSGPNVGRSFWGCSSYPQCRGI 244

Query: 149 LNSKPIAQACA 159
           +N K   +  A
Sbjct: 245 VNIKTAEEKAA 255



 Score = 40.8 bits (94), Expect = 2e-08
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 6/50 (12%)

Query: 71  CPECGHELVLRQGRYG-----MFIGCSHYPQCHHIESMDSPSQEETSPDI 115
           CP+CG  +VLR+ + G      F GCS YPQC  I ++ + ++E+ + DI
Sbjct: 210 CPKCGKNMVLRKSKSGPNVGRSFWGCSSYPQCRGIVNIKT-AEEKAADDI 258



 Score = 37.0 bits (84), Expect = 3e-07
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 5/32 (15%)

Query: 24  CPQCGAALQLRHGKHGP-----FLGCTAYPEC 50
           CP+CG  + LR  K GP     F GC++YP+C
Sbjct: 210 CPKCGKNMVLRKSKSGPNVGRSFWGCSSYPQC 241