Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 900 a.a., DNA topoisomerase I from Sinorhizobium meliloti 1021

 Score = 54.3 bits (129), Expect = 6e-12
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 2   SMSRKIDPQLFAAHEHALQSSPCPQCGAA-LQLRHGKHGPFLGCTAYPECDYIKPLHQND 60
           +++ ++ P +F   E       C  CG   L L+ GK+G F+GC+ YPEC+Y + L  + 
Sbjct: 592 ALNEELAPLVFPKREDGGDPRICQVCGTGKLSLKLGKYGAFVGCSNYPECNYTRQLSSDS 651

Query: 61  --------GHIIKELGVPCPECGHELVLRQGRYGMFI 89
                    +  + LG   P  G E+ LR GR+G ++
Sbjct: 652 NGDAEAAAANEPQSLGKD-PHTGEEITLRNGRFGPYV 687



 Score = 42.7 bits (99), Expect = 2e-08
 Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 71  CPECGH-ELVLRQGRYGMFIGCSHYPQCHHIESMDSPS 107
           C  CG  +L L+ G+YG F+GCS+YP+C++   + S S
Sbjct: 614 CQVCGTGKLSLKLGKYGAFVGCSNYPECNYTRQLSSDS 651



 Score = 32.0 bits (71), Expect = 3e-05
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 106 PSQEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCKF 147
           P +E+     +C  CG G L  +  ++G  F  C  YP+C +
Sbjct: 603 PKREDGGDPRICQVCGTGKLSLKLGKYG-AFVGCSNYPECNY 643