Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 872 a.a., DNA topoisomerase I (RefSeq) from Shewanella amazonensis SB2B

 Score = 48.1 bits (113), Expect = 4e-10
 Identities = 43/141 (30%), Positives = 59/141 (41%), Gaps = 27/141 (19%)

Query: 69  VPCPECGHELVLRQGRYGMFIGCSHY-----PQCHHI------ESMDSPSQEETSPDIL- 116
           +PCP CG ++ +R G  G+F+GCS Y      +C         E   S S E+   D L 
Sbjct: 606 IPCPTCGRQMGIRTGTTGVFLGCSGYALPPKERCKTTLNLTPGEEAISDSSEDAETDALR 665

Query: 117 ----CPECG---KGHLIE--RKSRFGKLFYACDAYPKCKFALNSK----PIAQACAQCGF 163
               C +CG     +L++  RK         CD Y   K A   K    PI + C +CG 
Sbjct: 666 AMHRCGKCGMAMDSYLLDETRKLHVCGNNPECDGYEVEKGAFKLKGYEGPIIE-CDRCG- 723

Query: 164 TVMVEKKSAAGMRYQCANRQC 184
           + M  K    G  + C N  C
Sbjct: 724 SDMELKNGRFGKYFGCTNESC 744



 Score = 40.0 bits (92), Expect = 1e-07
 Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 19/140 (13%)

Query: 15  HEHALQSSPCPQCGAALQLRHGKHGPFLGCTAY---PECDYIKPLHQNDG-HIIKELGVP 70
           ++  L   PCP CG  + +R G  G FLGC+ Y   P+      L+   G   I +    
Sbjct: 599 NQMVLTDIPCPTCGRQMGIRTGTTGVFLGCSGYALPPKERCKTTLNLTPGEEAISDSSED 658

Query: 71  CPECGHELVLRQGRYGMFIG------------CSHYPQC--HHIESMDSPSQEETSPDIL 116
                   + R G+ GM +             C + P+C  + +E      +    P I 
Sbjct: 659 AETDALRAMHRCGKCGMAMDSYLLDETRKLHVCGNNPECDGYEVEKGAFKLKGYEGPIIE 718

Query: 117 CPECGKGHLIERKSRFGKLF 136
           C  CG    + +  RFGK F
Sbjct: 719 CDRCGSDMEL-KNGRFGKYF 737



 Score = 39.7 bits (91), Expect = 2e-07
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 24  CPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQNDGHIIKELGVPCPE--CGHE---L 78
           C +CG+ ++L++G+ G + GCT     +  K L   +    KE  +  PE  C       
Sbjct: 719 CDRCGSDMELKNGRFGKYFGCTNESCKNTRKLLKNGEAAPPKEDPIHLPELKCTKSDAYF 778

Query: 79  VLRQGRYGMFIGCSHYPQ 96
           VLR G  G+F+  S +P+
Sbjct: 779 VLRDGAAGIFLAASTFPR 796