Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 915 a.a., DNA topoisomerase (NCBI) from Rhodospirillum rubrum S1H

 Score = 59.7 bits (143), Expect = 2e-13
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 2   SMSRKIDPQLFAAHEHALQSSPCPQCGAA-LQLRHGKHGPFLGCTAYPECDYIKPL---- 56
           ++ +++ P LF   E       CP C A  L LR GK G F+GC+ YP+C + +PL    
Sbjct: 588 ALDKELGPHLFPQAEDGHDPRVCPVCSAGRLGLRIGKFGAFVGCSNYPDCKFTRPLVTKE 647

Query: 57  -HQNDGHIIKELGV----PCPECGHELVLRQGRYGMFI 89
               DG  + E G       P  G ++ LR+G YG+++
Sbjct: 648 GEGGDGAALAEDGTKPLGKDPVSGEDVTLRKGPYGLYV 685



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 71  CPECGH-ELVLRQGRYGMFIGCSHYPQC 97
           CP C    L LR G++G F+GCS+YP C
Sbjct: 610 CPVCSAGRLGLRIGKFGAFVGCSNYPDC 637



 Score = 35.0 bits (79), Expect = 4e-06
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 106 PSQEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCKF 147
           P  E+     +CP C  G L  R  +FG  F  C  YP CKF
Sbjct: 599 PQAEDGHDPRVCPVCSAGRLGLRIGKFG-AFVGCSNYPDCKF 639