Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 911 a.a., type I DNA topoisomerase from Rhodopseudomonas palustris CGA009

 Score = 63.2 bits (152), Expect = 1e-14
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 3   MSRKIDPQLFAAHEHALQSSPCPQCGAA-LQLRHGKHGPFLGCTAYPECDYIKPLHQND- 60
           +   + P ++ A E       CP CG   L L+ GK G F+GC+ YPEC Y +PL  +  
Sbjct: 584 LDEMLGPHIYPAREDGGDPRQCPSCGTGKLNLKAGKFGAFVGCSNYPECRYTRPLASDSA 643

Query: 61  GHIIKELGVPCPECGHELVLRQGRYGMFI 89
           G   + LG   P+ G E+ ++ GR+G +I
Sbjct: 644 GDADRVLGTD-PDSGLEVAVKSGRFGPYI 671



 Score = 43.5 bits (101), Expect = 1e-08
 Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 71  CPECGH-ELVLRQGRYGMFIGCSHYPQCHHIESMDSPS 107
           CP CG  +L L+ G++G F+GCS+YP+C +   + S S
Sbjct: 605 CPSCGTGKLNLKAGKFGAFVGCSNYPECRYTRPLASDS 642



 Score = 37.7 bits (86), Expect = 6e-07
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 106 PSQEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCKFALNSKPIAQACA 159
           P++E+      CP CG G L  +  +FG  F  C  YP+C++   ++P+A   A
Sbjct: 594 PAREDGGDPRQCPSCGTGKLNLKAGKFG-AFVGCSNYPECRY---TRPLASDSA 643