Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 900 a.a., DNA topoisomerase TopA from Phaeobacter inhibens DSM 17395

 Score = 55.1 bits (131), Expect = 4e-12
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 9   PQLFAAHEHALQSSPCPQCGAA-LQLRHGKHGPFLGCTAYPECDYIKPLHQNDGHIIKEL 67
           PQL+   E  +    CP+CGA  L L+  + G F+GC  YPEC+Y +P+        +  
Sbjct: 600 PQLYPPREDGVDPRVCPKCGAGQLHLKTSRTGGFVGCGNYPECNYTRPISGEGAEGYER- 658

Query: 68  GVPCPECGHELVLRQGRYGMFI 89
            +   + G E+ L+ GR+G ++
Sbjct: 659 -ILGEDDGDEIHLKSGRFGPYV 679



 Score = 39.3 bits (90), Expect = 2e-07
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 71  CPECGH-ELVLRQGRYGMFIGCSHYPQCHHIESMDSPSQEETSPDILCPECGKGHLIERK 129
           CP+CG  +L L+  R G F+GC +YP+C++   +     E     +   +  + HL  + 
Sbjct: 615 CPKCGAGQLHLKTSRTGGFVGCGNYPECNYTRPISGEGAEGYERILGEDDGDEIHL--KS 672

Query: 130 SRFGKLFYACDAYPKCK 146
            RFG      +A P+ K
Sbjct: 673 GRFGPYVQRGEATPENK 689



 Score = 35.4 bits (80), Expect = 3e-06
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 106 PSQEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCKFALNSKPIA 155
           P +E+     +CP+CG G L  + SR G  F  C  YP+C +   ++PI+
Sbjct: 604 PPREDGVDPRVCPKCGAGQLHLKTSRTGG-FVGCGNYPECNY---TRPIS 649