Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 898 a.a., DNA topoisomerase I (RefSeq) from Shewanella loihica PV-4

 Score = 41.6 bits (96), Expect = 4e-08
 Identities = 39/145 (26%), Positives = 55/145 (37%), Gaps = 35/145 (24%)

Query: 69  VPCPECGHELVLRQGRYGMFIGCSHY-----PQCHHI------ESMDSPSQEETSPDIL- 116
           + CP CG  + +R G  G+F+GCS Y      +C         E   S + E+   D L 
Sbjct: 622 IACPTCGRPMGIRTGTTGVFLGCSGYALPPKERCKTTMNLTPGEEAVSENSEDAETDALR 681

Query: 117 ----CPECG---KGHLIERKSRFGKLFYACDAYPKC----------KFALNSKPIAQACA 159
               C  CG     +LI+ K +     + C   P C          K      PI + C 
Sbjct: 682 AKHRCDVCGTAMDSYLIDEKRK----LHVCGNNPICGGYEVEQGQFKIKGYEGPIIE-CD 736

Query: 160 QCGFTVMVEKKSAAGMRYQCANRQC 184
           +CG   M  K    G  + C N +C
Sbjct: 737 RCG-NDMELKNGRFGKYFGCTNSEC 760



 Score = 40.4 bits (93), Expect = 9e-08
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)

Query: 24  CPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQNDGHIIKELGVP-------CPECGH 76
           C +CG  ++L++G+ G + GCT   EC   + L +N G +      P       C +   
Sbjct: 735 CDRCGNDMELKNGRFGKYFGCT-NSECKNTRKLLKN-GEVAPPKEDPIHLPELKCTKSDG 792

Query: 77  ELVLRQGRYGMFIGCSHYPQ 96
             VLR G  G+F+  S +P+
Sbjct: 793 YFVLRDGAAGIFLAASTFPK 812



 Score = 34.3 bits (77), Expect = 7e-06
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 15  HEHALQSSPCPQCGAALQLRHGKHGPFLGCTAY 47
           +E  L    CP CG  + +R G  G FLGC+ Y
Sbjct: 615 NEMVLTDIACPTCGRPMGIRTGTTGVFLGCSGY 647



 Score = 25.4 bits (54), Expect = 0.003
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 114 DILCPECGKGHLIERKSRFGKLFYACDAY-----PKCKFALNSKPIAQACAQ 160
           DI CP CG+   I R    G +F  C  Y      +CK  +N  P  +A ++
Sbjct: 621 DIACPTCGRPMGI-RTGTTG-VFLGCSGYALPPKERCKTTMNLTPGEEAVSE 670