Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 818 a.a., topoisomerase IA from Dechlorosoma suillum PS

 Score = 62.0 bits (149), Expect = 3e-14
 Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 16/112 (14%)

Query: 3   MSRKIDPQLFAAHEHALQSSP--CPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQND 60
           +S K+D  +F  H  + +++   CPQCG  ++ R G  G F GC+ YP+C++   +   D
Sbjct: 708 LSGKVD-FVFEQHTESSEAAAVACPQCGKPMRRRKGGTGFFWGCSGYPDCNH--TMDDKD 764

Query: 61  GHIIK----------ELGVPCPECGH-ELVLRQGRYGMFIGCSHYPQCHHIE 101
           G  +           ++G  CP C   +L  RQ     F+GC+ YP C H E
Sbjct: 765 GKAVPKQPKVARQAGKVGETCPTCQKGKLTGRQSNGTSFLGCTKYPACRHYE 816



 Score = 59.3 bits (142), Expect = 2e-13
 Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 14/89 (15%)

Query: 69  VPCPECGHELVLRQGRYGMFIGCSHYPQCHHIESMDS------PSQEETSPDI-----LC 117
           V CP+CG  +  R+G  G F GCS YP C+H  +MD       P Q + +         C
Sbjct: 728 VACPQCGKPMRRRKGGTGFFWGCSGYPDCNH--TMDDKDGKAVPKQPKVARQAGKVGETC 785

Query: 118 PECGKGHLIERKSRFGKLFYACDAYPKCK 146
           P C KG L  R+S  G  F  C  YP C+
Sbjct: 786 PTCQKGKLTGRQSN-GTSFLGCTKYPACR 813



 Score = 32.0 bits (71), Expect = 3e-05
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 115 ILCPECGKGHLIERKSRFGKLFYACDAYPKCKFALNSK 152
           + CP+CGK  +  RK   G  F+ C  YP C   ++ K
Sbjct: 728 VACPQCGKP-MRRRKGGTG-FFWGCSGYPDCNHTMDDK 763



 Score = 27.3 bits (59), Expect = 7e-04
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 7/38 (18%)

Query: 148 ALNSKPIAQACAQCGFTVMVEKKSAAGMRYQCANRQCG 185
           A+ +KP+A AC +CG T M     A    + C+   CG
Sbjct: 628 AMQAKPMAAACPKCGNTTM----GATAKTFSCS---CG 658