Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

 Score = 89.0 bits (219), Expect = 2e-22
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 24  CPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQNDGHIIKELGVPCPECGHELVLRQG 83
           CP+CG  L ++ G +G F GC  YP+C Y + L+       KE+   CP+CG +L  R+G
Sbjct: 684 CPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKLNGESNE--KEIVGKCPKCGSDLYKRKG 741

Query: 84  RYGMFIGCSHYPQCHHIESMDSPSQE 109
           R+G FIGCS+YP+C H E +D   ++
Sbjct: 742 RFGEFIGCSNYPKCRHTEKIDKKKED 767



 Score = 75.1 bits (183), Expect = 3e-18
 Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 3/76 (3%)

Query: 71  CPECGHELVLRQGRYGMFIGCSHYPQCHHIESMDSPSQEETSPDILCPECGKGHLIERKS 130
           CP+CG++L++++G YG+F GC +YP+C + E ++  S E+      CP+CG   L +RK 
Sbjct: 684 CPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKLNGESNEKEIVG-KCPKCG-SDLYKRKG 741

Query: 131 RFGKLFYACDAYPKCK 146
           RFG+ F  C  YPKC+
Sbjct: 742 RFGE-FIGCSNYPKCR 756



 Score = 45.8 bits (107), Expect = 2e-09
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 53/167 (31%)

Query: 73  ECGHELVL-RQGRYGMFIGCSHYPQCH---------HIESMDSPSQEETSPDI------- 115
           +CG ++++ R      F+GCS+YP C           I+ ++   ++  +P I       
Sbjct: 597 KCGGDMIIIRTKGKKRFVGCSNYPDCEVTFPLPQKGRIKVLNEVCEKCQNPVIGLDRIKI 656

Query: 116 --------------------------LCPECGKGHLIERKSRFGKLFYACDAYPKCKFA- 148
                                     +CP+CG   LI +K  +G +F  C+ YPKCK+  
Sbjct: 657 CVNPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLI-KKGPYG-VFRGCENYPKCKYTE 714

Query: 149 -----LNSKPIAQACAQCGFTVMVEKKSAAGMRYQCAN-RQCGHIQE 189
                 N K I   C +CG + + ++K   G    C+N  +C H ++
Sbjct: 715 KLNGESNEKEIVGKCPKCG-SDLYKRKGRFGEFIGCSNYPKCRHTEK 760