Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., topoisomerase DNA-binding C4 zinc finger domain-containing protein from Methanococcus maripaludis JJ

 Score = 40.8 bits (94), Expect = 2e-08
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 24  CPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQ 58
           CP CG  L+L   K G FLGC++YP+C Y + L++
Sbjct: 255 CPWCGEKLRLIKTKKGEFLGCSSYPKCLYRRFLNK 289



 Score = 37.0 bits (84), Expect = 3e-07
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 71  CPECGHELVLRQGRYGMFIGCSHYPQC 97
           CP CG +L L + + G F+GCS YP+C
Sbjct: 255 CPWCGEKLRLIKTKKGEFLGCSSYPKC 281



 Score = 27.3 bits (59), Expect = 3e-04
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 11/55 (20%)

Query: 101 ESMDSPSQEETSPDILCPECG-KGHLIERKSRFGKLFYACDAYPKCKFA--LNSK 152
           E +   S E T     CP CG K  LI+ K   G+ F  C +YPKC +   LN K
Sbjct: 244 EELKKHSDENT-----CPWCGEKLRLIKTKK--GE-FLGCSSYPKCLYRRFLNKK 290