Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 878 a.a., DNA topoisomerase I (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 41.6 bits (96), Expect = 4e-08
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 11/81 (13%)

Query: 24  CPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQN--------DGHIIKELGVPCPECG 75
           C +CG  ++L++G+ G + GCT   EC   + L +N        D   + EL   C +  
Sbjct: 718 CDRCGHDMELKNGRFGKYFGCT-NEECKNTRKLLKNGEAAPPKEDPIYLPEL--KCSKSD 774

Query: 76  HELVLRQGRYGMFIGCSHYPQ 96
              VLR G  G+F+  S +P+
Sbjct: 775 AHFVLRDGAAGIFLAASTFPK 795



 Score = 41.2 bits (95), Expect = 5e-08
 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 69  VPCPECGHELVLRQGRYGMFIGCSHYPQCHHIESM-----DSPSQEET--SPDILCPECG 121
           + C  CGH++ L+ GR+G + GC++  +C +   +      +P +E+    P++ C +  
Sbjct: 716 IECDRCGHDMELKNGRFGKYFGCTN-EECKNTRKLLKNGEAAPPKEDPIYLPELKCSK-S 773

Query: 122 KGHLIERKSRFGKLFYACDAYPKCK 146
             H + R    G +F A   +PK +
Sbjct: 774 DAHFVLRDGAAG-IFLAASTFPKSR 797



 Score = 38.5 bits (88), Expect = 3e-07
 Identities = 33/144 (22%), Positives = 50/144 (34%), Gaps = 34/144 (23%)

Query: 69  VPCPECGHELVLRQGRYGMFIGCSHY---------------PQCHHIESMDSPSQEETSP 113
           + CP CG  + +R G  G+F+GCS Y               P    I   +    +    
Sbjct: 606 IKCPTCGRPMGIRTGTTGVFLGCSGYELPPKERCKTTMNLTPGIEAISDSEDAETDALRA 665

Query: 114 DILCPECG---KGHLIERKSRFGKLFYACDAYPKC----------KFALNSKPIAQACAQ 160
              C  CG     +L++ K +     + C   P C          K      P+ + C +
Sbjct: 666 KHRCGICGTAMDSYLLDEKRK----LHVCGNNPVCEGYEVEEGQFKIKGYEGPLIE-CDR 720

Query: 161 CGFTVMVEKKSAAGMRYQCANRQC 184
           CG   M  K    G  + C N +C
Sbjct: 721 CGHD-MELKNGRFGKYFGCTNEEC 743



 Score = 34.3 bits (77), Expect = 7e-06
 Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 24/133 (18%)

Query: 24  CPQCGAALQLRHGKHGPFLGCTAY---------------PECDYIKPLHQNDGHIIKELG 68
           CP CG  + +R G  G FLGC+ Y               P  + I      +   ++   
Sbjct: 608 CPTCGRPMGIRTGTTGVFLGCSGYELPPKERCKTTMNLTPGIEAISDSEDAETDALRAKH 667

Query: 69  VPCPECGHEL--VLRQGRYGMFIGCSHYPQC--HHIESMDSPSQEETSPDILCPECGKGH 124
             C  CG  +   L   +  + + C + P C  + +E      +    P I C  C  GH
Sbjct: 668 -RCGICGTAMDSYLLDEKRKLHV-CGNNPVCEGYEVEEGQFKIKGYEGPLIECDRC--GH 723

Query: 125 LIERKS-RFGKLF 136
            +E K+ RFGK F
Sbjct: 724 DMELKNGRFGKYF 736