Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  218 bits (555), Expect = 5e-62
 Identities = 97/185 (52%), Positives = 123/185 (66%), Gaps = 6/185 (3%)

Query: 3   MSRKIDPQLFAAHEHALQSSP--CPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQND 60
           M  KID QLF+AHEHAL+     CP+CG+ L ++H KHG F+GC  YP C Y +PL Q++
Sbjct: 1   MMSKIDEQLFSAHEHALEKEYELCPECGSELSVKHSKHGSFIGCNNYPNCAYTRPLVQHE 60

Query: 61  GHIIKEL-GVPCPECGHELVLRQGRYGMFIGCSHYPQCHHIESMDSPSQEETSPDILCPE 119
               + + G  CPECGHEL ++ GR+G+FIGC+ YP C HIE    P QE   P + CPE
Sbjct: 61  SIETQVIEGSKCPECGHELAVKSGRFGIFIGCTQYPSCTHIER---PDQESDKPQVACPE 117

Query: 120 CGKGHLIERKSRFGKLFYACDAYPKCKFALNSKPIAQACAQCGFTVMVEKKSAAGMRYQC 179
           C  G L  R SRFGK FYAC AYPKCKF +N  P+ + C  CGF ++VE+K AAGMR +C
Sbjct: 118 CKTGKLEHRTSRFGKGFYACSAYPKCKFIVNYPPVGETCPSCGFGILVERKGAAGMRLEC 177

Query: 180 ANRQC 184
             + C
Sbjct: 178 PQKSC 182