Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 865 a.a., DNA topoisomerase I from Klebsiella michiganensis M5al

 Score = 41.6 bits (96), Expect = 4e-08
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 24  CPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQNDGHII--KELGVPCPECGHE---- 77
           C +CG+ + L+ G+ G ++ CT   EC   + + +N G +   KE  VP PE   E    
Sbjct: 711 CEKCGSEMHLKMGRFGKYMACT-NDECKNTRKILRN-GEVAPPKEDPVPLPELPCEKSDA 768

Query: 78  -LVLRQGRYGMFIGCSHYPQ 96
             VLR G  G+F+  + +P+
Sbjct: 769 YFVLRDGAAGVFLAANTFPK 788



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 25/142 (17%)

Query: 19  LQSSPCPQCGAALQLRHGKHGPFLGCTAY---------------PECDYIKPLHQNDGHI 63
           L +  CP CG  + +R    G FLGC+ Y               PE + +  L   D   
Sbjct: 594 LTTIDCPTCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGEDAET 653

Query: 64  -IKELGVPCPECGHEL--VLRQGRYGMFIGCSHYPQC--HHIESMDSPSQEETSPDILCP 118
                   C +CG  +   L   +  + + C + P C  + IE  +   +    P + C 
Sbjct: 654 NALRAKRRCKKCGTAMDSYLIDPKRKLHV-CGNNPTCDGYEIEEGEFRIKGYDGPIVECE 712

Query: 119 ECG-KGHLIERKSRFGKLFYAC 139
           +CG + HL  +  RFGK + AC
Sbjct: 713 KCGSEMHL--KMGRFGK-YMAC 731



 Score = 35.4 bits (80), Expect = 3e-06
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 36/146 (24%)

Query: 69  VPCPECGHELVLRQGRYGMFIGCSHY---------------PQCHHIESMDSPSQEETS- 112
           + CP CG ++ +R    G+F+GCS Y               P+   +  ++    E  + 
Sbjct: 597 IDCPTCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGEDAETNAL 656

Query: 113 -PDILCPECG---KGHLIERKSRFGKLFYACDAYPKC--------KFALN--SKPIAQAC 158
                C +CG     +LI+ K +     + C   P C        +F +     PI + C
Sbjct: 657 RAKRRCKKCGTAMDSYLIDPKRK----LHVCGNNPTCDGYEIEEGEFRIKGYDGPIVE-C 711

Query: 159 AQCGFTVMVEKKSAAGMRYQCANRQC 184
            +CG + M  K    G    C N +C
Sbjct: 712 EKCG-SEMHLKMGRFGKYMACTNDEC 736



 Score = 24.3 bits (51), Expect = 0.007
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 19  LQSSPCPQCGAALQLRHGKHGPFLGCTAYPE 49
           L   PC +  A   LR G  G FL    +P+
Sbjct: 758 LPELPCEKSDAYFVLRDGAAGVFLAANTFPK 788