Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  129 bits (323), Expect = 2e-34
 Identities = 67/178 (37%), Positives = 98/178 (55%), Gaps = 20/178 (11%)

Query: 24  CPQCGAALQLRHGKHGPFLGCTAYPECDYIKPLHQND-GHIIKELGV--------PCPEC 74
           CP+CG  + ++ GK GPFL CTAYP+C +     +++ G I+ E            CPEC
Sbjct: 585 CPECGKPVVVKFGKAGPFLACTAYPDCKFTSNFSRDEKGDIVIEQRAREELEAVGTCPEC 644

Query: 75  GHELVLRQGRYGM-FIGCSHYPQCHHIESMDSPSQEETSPDILCPECG-KGHLIERKSRF 132
           G +LV+++ R G  FI C+ YP C H E          S  I CP  G  G L+E+ S+ 
Sbjct: 645 GKDLVVKKARTGSRFIACTGYPDCRHTEPF--------STGIACPREGCDGQLVEKSSKR 696

Query: 133 GKLFYACDAYPKCKFALNSKPIAQACAQCGFTVMVEKKS-AAGMRYQCANRQCGHIQE 189
           GK+FY+C+ +PKC +AL   P+   C  CG  ++V+K + A G+   C  + C + QE
Sbjct: 697 GKIFYSCNRFPKCDYALWDWPVPGPCPVCGSPLLVKKSTRAKGLHIACPEKTCRYTQE 754



 Score = 57.8 bits (138), Expect = 5e-13
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 20/130 (15%)

Query: 14  AHEHALQSSPCPQCGAALQLRHGKHGP-FLGCTAYPECDYIKPLHQNDGHIIKELGVPCP 72
           A E       CP+CG  L ++  + G  F+ CT YP+C + +P            G+ CP
Sbjct: 631 AREELEAVGTCPECGKDLVVKKARTGSRFIACTGYPDCRHTEPF---------STGIACP 681

Query: 73  E--CGHELVLRQGRYG-MFIGCSHYPQCHHIESMDSPSQEETSPDILCPECGKGHLIERK 129
              C  +LV +  + G +F  C+ +P+C +    D P          CP CG   L+++ 
Sbjct: 682 REGCDGQLVEKSSKRGKIFYSCNRFPKCDY-ALWDWPVPGP------CPVCGSPLLVKKS 734

Query: 130 SRFGKLFYAC 139
           +R   L  AC
Sbjct: 735 TRAKGLHIAC 744



 Score = 43.1 bits (100), Expect = 1e-08
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 24/83 (28%)

Query: 114 DILCPECGKGHLIERKSRFGKL--FYACDAYPKCKFALN-----------------SKPI 154
           D+ CPECGK  ++    +FGK   F AC AYP CKF  N                     
Sbjct: 582 DVTCPECGKPVVV----KFGKAGPFLACTAYPDCKFTSNFSRDEKGDIVIEQRAREELEA 637

Query: 155 AQACAQCGFTVMVEKKSAAGMRY 177
              C +CG  ++V KK+  G R+
Sbjct: 638 VGTCPECGKDLVV-KKARTGSRF 659