Pairwise Alignments

Query, 190 a.a., DNA topoisomerase from Vibrio cholerae E7946 ATCC 55056

Subject, 899 a.a., DNA topoisomerase I from Caulobacter crescentus NA1000

 Score = 54.3 bits (129), Expect = 6e-12
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 2   SMSRKIDPQLFAAHEHALQSSPCPQCGAA-LQLRHGKHGPFLGCTAYPECDYIKPLHQND 60
           +++  + P +F           CP CG+  L L+ GK G F+GC+ YPEC Y + L  ++
Sbjct: 577 ALNEALGPHIFPDKGDGSNPRLCPTCGSGQLSLKTGKFGAFIGCSNYPECRYTRQLGVSE 636

Query: 61  G-----HIIKELGVPCPECGHELVLRQGRYGMFI 89
           G        K+LG+  P  G  + L+ GR+G ++
Sbjct: 637 GDGDAESADKQLGLN-PATGLAVWLKNGRFGPYV 669



 Score = 43.1 bits (100), Expect = 1e-08
 Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 71  CPECGH-ELVLRQGRYGMFIGCSHYPQCHHIESM 103
           CP CG  +L L+ G++G FIGCS+YP+C +   +
Sbjct: 599 CPTCGSGQLSLKTGKFGAFIGCSNYPECRYTRQL 632



 Score = 37.7 bits (86), Expect = 6e-07
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 106 PSQEETSPDILCPECGKGHLIERKSRFGKLFYACDAYPKCKF 147
           P + + S   LCP CG G L  +  +FG  F  C  YP+C++
Sbjct: 588 PDKGDGSNPRLCPTCGSGQLSLKTGKFG-AFIGCSNYPECRY 628