Pairwise Alignments

Query, 371 a.a., DNA-protecting protein DprA from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake from Pseudomonas fluorescens FW300-N2E2

 Score =  219 bits (557), Expect = 1e-61
 Identities = 147/369 (39%), Positives = 208/369 (56%), Gaps = 22/369 (5%)

Query: 5   DLAAWLALCFTPKLGSKTISHLL-ATRLPAQLQSFTPKQWLACGLKPEQLVFLTTQAAKQ 63
           +L A L L   P+LG K    L+ A    ++  S     W A GL    +        + 
Sbjct: 13  ELEARLRLHRLPELGPKRFMTLMEAFGSASKAVSAPASAWRALGLPLACVEARRNPDVRD 72

Query: 64  -AEQCLQWRSAANNRYIVTPHCPLYPRLLKEINSSPPVLFIEGIWEAVHDPAVAIVGSRN 122
            A   L W   A    ++    P YP LL +I+ +PP+LF+ G    +  P +A+VGSR 
Sbjct: 73  GAAHALAWLERAGQHLLMWDQ-PDYPALLAQISDAPPLLFVAGDASILEKPQLAMVGSRR 131

Query: 123 ASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDGALQAQGQTVAVLGSGLAQVYPK 182
           AS  G   A  F+  LA +G V+TSGLALGID  AH  AL   G+TV VLG+GL   YP+
Sbjct: 132 ASRPGMDTAAAFSRSLAGAGFVITSGLALGIDAAAHQAALDVGGRTVGVLGTGLENFYPQ 191

Query: 183 QHQGLAERIIAQG-ALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLITA 241
           +++ LA+ +IAQG A++SEF    PP A +FPRRNRIISGLSLGV+VVEA+  SGSLITA
Sbjct: 192 RNRRLADAMIAQGSAVLSEFPLDAPPHASNFPRRNRIISGLSLGVLVVEASVASGSLITA 251

Query: 242 RYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQVPY 301
           R AAEQGREV+ +PGSI +  ++G +QLIR GA LV++V+ I + L+    W   +++P 
Sbjct: 252 RLAAEQGREVYAIPGSIHHPGARGCHQLIRDGAALVETVEHILEALRG---W---QRLP- 304

Query: 302 QATLFSAVQSDEELPFPELLANVGIEATPI--DILASRTQIPVQDIMMQLLELELLGHVV 359
                    + E +P    L  + + A P+  + LA  +   +  ++  L ELE+ G  +
Sbjct: 305 --------PASEPVPVTHPLLRL-LHAAPLSSEALAEASGWGLPKVLAALTELEMDGRAI 355

Query: 360 AVPGGYIRK 368
              G +  +
Sbjct: 356 CDNGRWFAR 364