Pairwise Alignments

Query, 391 a.a., LysM peptidoglycan-binding domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., Uncharacterized protein with LysM domain, COG1652 from Pseudomonas fluorescens FW300-N2E2

 Score =  149 bits (377), Expect = 9e-41
 Identities = 106/345 (30%), Positives = 172/345 (49%), Gaps = 28/345 (8%)

Query: 27  ALLPFTLLSGQVTADEQTPLALKPNAPTTYTVVKGDTLWDISALYLDSPWLWPRLWQVNP 86
           +LL   LL+    A  Q  + L+   P  YTVV GDTLWDIS  YL  PW WP LWQ NP
Sbjct: 4   SLLALLLLASAGIAHGQ--VQLREGFPQQYTVVTGDTLWDISGKYLREPWKWPELWQANP 61

Query: 87  EIDNPHLIYPGDKLTLFWRDGQPELSL-----KPMRKLSPQVRVLE-KQAVPTVQEGLVL 140
           +I+NP+LIYPGD L+L + +GQP L+L     +   KLSP++R      A+P++    + 
Sbjct: 62  QIENPNLIYPGDTLSLVYVNGQPRLTLNRGTSRGTIKLSPRIRSSPVADAIPSIPLQAIN 121

Query: 141 PYLQSDRLM-AKTALQGSVRVIGSSEGRQYLTKQDQLYISGVH--SEKKWGIYREVAQYQ 197
            +L S+R++        +  ++  +  R      D+++  G    ++  +GI+R+   Y 
Sbjct: 122 SFLLSNRIVDTPEDFNKAPYIVAGNAERVLSGMGDRVFARGSFDANQTAYGIFRQGKVY- 180

Query: 198 RDDEVMVALRL----VAVGELAMTGGNFSGLSLLEQNQEILANDIALPEVDLEERQLSTT 253
            D E    L +    +  GE+  + G+ + L+L    QE+   D        EER +++T
Sbjct: 181 TDPETKEFLGINADDIGGGEVVASEGDVTTLALQRTTQEVRLGDRLFSG---EERSINST 237

Query: 254 FYPQPAPAGSEARILGSLEGSQYAGQNQVVVIDQGRSDGVAQGSMFELYQAAVQVKAKQD 313
           F P    +     IL    G    G   VV +++GR DG+ +G++  + +    V+ +  
Sbjct: 238 FMPSAPQSDIHGLILDVPRGVTQIGALDVVTLNKGRRDGLIEGNVLAVMKTGETVRDR-- 295

Query: 314 SSTFLSERSNTDVQLPSVKVGALMVIRPYERFSLALITNSSAPIS 358
                 ER    V++P  + G LMV R Y++ S  L+  +S  ++
Sbjct: 296 ---ITGER----VKIPDERAGLLMVFRTYDKLSYGLVLYASRSLA 333