Pairwise Alignments

Query, 391 a.a., LysM peptidoglycan-binding domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., LysM domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  175 bits (444), Expect = 2e-48
 Identities = 109/336 (32%), Positives = 177/336 (52%), Gaps = 29/336 (8%)

Query: 46  LALKPNAPTTYTVVKGDTLWDISALYLDSPWLWPRLWQVNPEIDNPHLIYPGDKLTLFWR 105
           L LKP  P TY VVKGDTLWDISA +L+ PW WP+LW  NP+I NPHLIYPGD+LTL + 
Sbjct: 5   LTLKPGHPDTYVVVKGDTLWDISAKFLNDPWRWPKLWNANPQIANPHLIYPGDRLTLVFI 64

Query: 106 DGQPELSLKPMRKLSPQVRVLEK-QAVPTVQEGLVLPYLQSDRLMAKTALQGSVRVIGSS 164
           DGQP L +KP  + SP+ RV+ K  A+P V   L+ PYL  +R++          ++G  
Sbjct: 65  DGQPRLVVKPQVRKSPEGRVMPKGGAIPAVNLELIQPYLSQNRVVDDDWFAQQPMILGGE 124

Query: 165 EGRQYLTKQDQLYISGVHSEKKWGIYREVAQY--------QRDDEVMVALRLVAVGELAM 216
              ++  + D +Y+     + +  +  +VA Y        +  +E +    ++      +
Sbjct: 125 SPSRFHIESDVIYV-----QAELPVGMKVAAYDVGRIFTDKTTEETLGREVILTASGRVV 179

Query: 217 TGGNFSGLSLLEQNQEILANDIALPEVDLEERQLSTTFYPQPAPAGSEARILGSLEGSQY 276
             G  S + +    +E    +  LP  D  E  +S  F P+PA   ++A ++G+ +  + 
Sbjct: 180 ESGPISKIQISTNLRETRPGNRVLPIED--EALMSAYFMPKPADV-TDAYVIGTEKDIRE 236

Query: 277 AGQNQVVVIDQGRSDGVAQGSMFELYQAAVQVKAKQDSSTFLS-ER-----------SNT 324
            G+  VV I +G SDGV  G +F +++    V   ++ +   S +R           S++
Sbjct: 237 VGKLDVVYISKGESDGVEPGDVFAIHRDGETVVINKEGTPVPSIDRSAYGDLMATFGSDS 296

Query: 325 DVQLPSVKVGALMVIRPYERFSLALITNSSAPISAE 360
            ++LP V  G LMV + +++ S+ LI  ++ P+ A+
Sbjct: 297 AIKLPDVYHGNLMVFKVFDKVSMGLIMINNRPVRAD 332