Pairwise Alignments

Query, 391 a.a., LysM peptidoglycan-binding domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., peptidoglycan-binding LysM (RefSeq) from Shewanella loihica PV-4

 Score =  181 bits (460), Expect = 2e-50
 Identities = 124/364 (34%), Positives = 188/364 (51%), Gaps = 27/364 (7%)

Query: 20  LTRYITYALLPFTLLSGQVTADEQTPLALKPNAPTTYTVVKGDTLWDISALYLDSPWLWP 79
           + R I   L+ F+  S  V AD    L LK   P +Y V KGDTLWDISA +L  PW WP
Sbjct: 5   MKRLILLGLMIFS--SSFVVADT---LTLKSGHPDSYVVKKGDTLWDISAQFLKDPWRWP 59

Query: 80  RLWQVNPEIDNPHLIYPGDKLTLFWRDGQPELSLKPMRKLSPQVRVLEK-QAVPTVQEGL 138
           +LW  NP+I NPHLIYPGD+LTL + DG+P L +KP  + SP+ RVL K  A+P V   L
Sbjct: 60  KLWGANPQIANPHLIYPGDRLTLVFIDGEPRLVVKPHIRKSPEGRVLPKGGAIPAVDLSL 119

Query: 139 VLPYLQSDRLMAKTALQGSVRVIGSSEGRQYLTKQDQLYISG-VHSEKKWGIYREVAQY- 196
           + PYL  +R++          V+G     ++    D +YI G +    K+G+Y +  Q+ 
Sbjct: 120 IQPYLVQNRVVDGEWFDEQPMVMGGESESKHHVTDDVIYIQGELTLGDKFGVYAKGRQFE 179

Query: 197 --QRDDEVMVALRLVAVGELAMTGGNFSGLSLLEQNQEILANDIALPEVDLEERQLSTTF 254
             +  D++ + + L A G + +  G  S + LL   +E  A    LP   +E+  L + +
Sbjct: 180 DAESGDDLGLEVILTASGRV-IESGPVSKVRLLSNMRETKAGYRVLP---IEDDSLMSAY 235

Query: 255 YPQPAPAGSEARILGSLEGSQYAGQNQVVVIDQGRSDGVAQGSMFELYQAAVQV------ 308
           +  P  A +  ++L S +  +  G+  VV ID+G  DGV  G +F +++   +V      
Sbjct: 236 F-MPKAATTPGKVLASEKDVREMGKLDVVYIDRGSQDGVETGHVFSIFRDGAEVVIDGDG 294

Query: 309 --KAKQDSSTF----LSERSNTDVQLPSVKVGALMVIRPYERFSLALITNSSAPISAEVH 362
                +D ST+     S  S+   ++P +  G LMV + ++R SL LI  +  P+     
Sbjct: 295 KPVQPKDRSTYEELLASISSDNATKMPDIYRGKLMVFKVFDRVSLGLILINEKPVRVHDK 354

Query: 363 ALSP 366
            L P
Sbjct: 355 LLQP 358