Pairwise Alignments

Query, 391 a.a., LysM peptidoglycan-binding domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  172 bits (436), Expect = 1e-47
 Identities = 123/374 (32%), Positives = 185/374 (49%), Gaps = 35/374 (9%)

Query: 20  LTRYITYALLPFTLLSGQVTADEQTPLALKPNAPTTYTVVKGDTLWDISALYLDSPWLWP 79
           + R I  AL+ F   S  V AD    L LK   P +Y V KGDTLWDIS  +L+ PW WP
Sbjct: 5   MKRLILLALMTFN--STLVFADT---LTLKAGHPESYVVKKGDTLWDISTTFLNDPWKWP 59

Query: 80  RLWQVNPEIDNPHLIYPGDKLTLFWRDGQPEL----------SLKPMRKLSPQVRVLEK- 128
           RLW VNP+I NPHLIYPGD+LTL + DGQP L            KP  + SP+ RV+ K 
Sbjct: 60  RLWDVNPQIANPHLIYPGDQLTLVFIDGQPRLVRNGASVSTSEAKPHIRKSPEGRVIAKS 119

Query: 129 QAVPTVQEGLVLPYLQSDRLM-AKTALQGSVRVIGSSEGRQYLTKQDQLYI-SGVHSEKK 186
            A+P V   L+  YL  +R++ A   +Q  + + G S  R ++   D +YI S +   +K
Sbjct: 120 NAIPAVDLALIQNYLVQNRVVDADWFIQQPMVLAGESPSRHHVI-GDVIYINSELPLHQK 178

Query: 187 WGIYREVAQY--QRDDEVMVALRLVAVGELAMTGGNFSGLSLLEQNQEILANDIALPEVD 244
            G+Y    ++  +   E +    ++A     +  G  S + LL   +E  A    LP  D
Sbjct: 179 LGVYERGREFFNKETGEALGQEAILASTGQVIESGKVSKVKLLSNFRETKAGFRVLPLED 238

Query: 245 LEERQLSTTFYPQPAPAGSEARILGSLEGSQYAGQNQVVVIDQGRSDGVAQGSMFELYQA 304
             E  +S  F P+PA   + A +L      + AG+  VV +D+G  DGV  G +F +Y+ 
Sbjct: 239 --EALMSAYFTPKPAELKTSASVLAIESKMREAGKLNVVYLDKGTQDGVKPGEVFSIYRD 296

Query: 305 AVQVKAKQD------------SSTFLSERSNTDVQLPSVKVGALMVIRPYERFSLALITN 352
             ++    D                 S  S+  +++P V  G L+V + +++ SL LI +
Sbjct: 297 GEEIVINNDGQPVPVMERTAYDDVVASLSSDRSLKMPDVYNGKLLVFKVFDKASLGLIVS 356

Query: 353 SSAPISAEVHALSP 366
           +   +  +   ++P
Sbjct: 357 TERSVRVDDKLIAP 370