Pairwise Alignments

Query, 391 a.a., LysM peptidoglycan-binding domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., peptidoglycan-binding LysM (RefSeq) from Shewanella sp. ANA-3

 Score =  172 bits (437), Expect = 1e-47
 Identities = 123/373 (32%), Positives = 190/373 (50%), Gaps = 33/373 (8%)

Query: 20  LTRYITYALLPFTLLSGQVTADEQTPLALKPNAPTTYTVVKGDTLWDISALYLDSPWLWP 79
           + R I  AL+ F      V+AD    L LK   P +Y V KGDTLWDISA +L+ PW WP
Sbjct: 5   MKRLILLALMTFNCTL--VSADT---LTLKAGHPESYVVKKGDTLWDISATFLNDPWKWP 59

Query: 80  RLWQVNPEIDNPHLIYPGDKLTLFWRDGQPEL------SLKPMRKLSPQVRVLEK-QAVP 132
           RLW VNP+I NPHLIYPGD+LTL + DGQP L        KP  + +P+ RV+ K  AVP
Sbjct: 60  RLWDVNPQIANPHLIYPGDQLTLVFIDGQPRLVRNGANEGKPHIRKTPEGRVIAKSNAVP 119

Query: 133 TVQEGLVLPYLQSDRLM-AKTALQGSVRVIGSSEGRQYLTKQDQLYI-SGVHSEKKWGIY 190
            V   L+  YL  +R++ A    Q  + + G S  R ++   D +YI S +   +K G+Y
Sbjct: 120 AVDLALIQNYLVQNRVVDADWFAQQPMVLAGESPSRHHVV-GDVIYIDSELPLNQKLGMY 178

Query: 191 ---REVAQYQRDDEVMVALRLVAVGELAMTGGNFSGLSLLEQNQEILANDIALPEVDLEE 247
              R+    Q  + +     L + G++ +  G  S + +L   +E  A   ALP  D  E
Sbjct: 179 ERGRDFFNKQTGEALGQEAILASTGQV-IESGKVSKVKILSNYRETKAGFRALPMED--E 235

Query: 248 RQLSTTFYPQPAPAGSEARILGSLEGSQYAGQNQVVVIDQGRSDGVAQGSMFELYQAAVQ 307
             +S  F P+PA   + A +L      + AG+  VV +D+G  DGV  G +F +Y+   +
Sbjct: 236 ALMSAYFTPKPAELKTPATVLAIESKMREAGKLNVVYLDKGTQDGVEPGEVFSIYRDGEE 295

Query: 308 VKAKQD------------SSTFLSERSNTDVQLPSVKVGALMVIRPYERFSLALITNSSA 355
           +    D             +   S  S+  +++P +  G L+V + +++ SL L+ ++  
Sbjct: 296 IVINNDGQPVPAAERTAYDNVVASLSSDRAIKMPDIYHGKLLVFKVFDKASLGLVVSTER 355

Query: 356 PISAEVHALSPQA 368
            +  +   ++P +
Sbjct: 356 SVRVDDKLIAPDS 368