Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) from Pseudomonas fluorescens FW300-N1B4

 Score =  411 bits (1056), Expect = e-119
 Identities = 225/430 (52%), Positives = 276/430 (64%), Gaps = 6/430 (1%)

Query: 1   MNVRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQA 60
           MN R AAA AL  V++   SL+++LP    ++  RD    Q++ +G  R  PRL +++  
Sbjct: 1   MNPRLAAAKALAAVLNGKASLNSSLPTQMDKVEDRDRGFTQDLAFGTARWQPRLSALAAK 60

Query: 61  LMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRN 120
           L+ KP K        L+LVGLYQL + R+PAHAA+GETV  A+ LK P  + L+NAVLR 
Sbjct: 61  LLQKPFKAADADVEALLLVGLYQLLYTRVPAHAAIGETVGCAEKLKKPWAKALLNAVLRR 120

Query: 121 YQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHH 180
            QR+ E L A+       R  HP WL K LK  +PEQW+ I  ANN+  PM LRVN +HH
Sbjct: 121 AQRESEALLAELEHDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILRVNRRHH 180

Query: 181 TRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLA 240
           TR  Y  LL +AGI  TP   ++D + L+   DV  LPGFAEGW+SVQD AAQLA   L 
Sbjct: 181 TRDAYLGLLTEAGIAATPCIYSQDGIILDAAADVRSLPGFAEGWISVQDEAAQLAADLLD 240

Query: 241 PQAGELILDCCAAPGGKTAHILERTPE-SQVVAIDCDETRLKRVRENLQRLELTAQVICG 299
              G+ +LD C APGGKT HILE  P  + VVA+D +  RL RVRENL RL L+A++I  
Sbjct: 241 LAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVRENLARLGLSAELIAA 300

Query: 300 DARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQ 359
           D R    WW G+ F RILLDAPCSATGVIRRHPDIK  R+ DDIAALA LQ E+LDAMW 
Sbjct: 301 DGRDTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIAALAVLQGELLDAMWI 360

Query: 360 QLKPGGSLVYATCSITPQENRLQVKAFLERTPDARL--VGSEPA--QP-GRQILPGEEAM 414
            L+ GG L+YATCS  P EN   ++AFL RTP AR   + S+    QP GRQ+L  E   
Sbjct: 361 TLEVGGILLYATCSTLPTENTEVIEAFLARTPGARELDIASQAGIKQPHGRQLLAQEGGH 420

Query: 415 DGFYYAVLSK 424
           DGFYYA L K
Sbjct: 421 DGFYYAKLIK 430