Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., ribosomal RNA small subunit methyltransferase RsmB from Pseudomonas stutzeri RCH2

 Score =  417 bits (1073), Expect = e-121
 Identities = 229/430 (53%), Positives = 279/430 (64%), Gaps = 6/430 (1%)

Query: 1   MNVRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQA 60
           MN R AAA AL  V+    SL ++LP    ++  RD  L Q++ +G  R  PRL  ++  
Sbjct: 1   MNPRLAAARALSVVLSGKASLGSSLPEVLGKVDARDRGLTQDLAFGTARWQPRLAGLADK 60

Query: 61  LMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRN 120
           L+ KP K   R    L+LVGLYQL + RIPAHAA+GETV     LK P  +GL+NAVLR 
Sbjct: 61  LLQKPFKAADRDVEALLLVGLYQLFYSRIPAHAAIGETVGCVDKLKKPWAKGLLNAVLRR 120

Query: 121 YQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHH 180
            QR+ E L A+       R  HP WL K LK  +PE W+ I  ANN+  PM LRVN +  
Sbjct: 121 AQREGEALLAELEHDPVIRVAHPRWLQKALKAHWPEHWEAICAANNAHPPMMLRVNRRQV 180

Query: 181 TRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLA 240
           +R  Y A L+ AGI   P   +ED + L  PCDVHQLPGFAEG VSVQD AAQLA + L 
Sbjct: 181 SRDGYLAELQGAGIEAHPCEFSEDGIRLAAPCDVHQLPGFAEGRVSVQDEAAQLAASLLD 240

Query: 241 PQAGELILDCCAAPGGKTAHILERTPE-SQVVAIDCDETRLKRVRENLQRLELTAQVICG 299
              G+ +LD C APGGKT H+LER P+ + +VA+D +  RL RVRENL+RL L A+++  
Sbjct: 241 LAPGQRVLDACCAPGGKTCHLLEREPQLAGLVALDLEPKRLLRVRENLERLHLQAELVAD 300

Query: 300 DARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQ 359
           DAR  ++WW G+ F RILLDAPCSATGVIRRHPDIK  R+ADDIA LA LQ E+LDA+W 
Sbjct: 301 DARATERWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAPLAALQGEMLDALWP 360

Query: 360 QLKPGGSLVYATCSITPQENRLQVKAFLERTPDAR---LVG--SEPAQPGRQILPGEEAM 414
            L+ GG L+YATCS+ P ENR  + AFLERTP AR   L G    P   GRQ+LP E   
Sbjct: 361 TLEVGGVLLYATCSVLPTENREVIAAFLERTPGARELDLAGGFGLPQMHGRQLLPQESGH 420

Query: 415 DGFYYAVLSK 424
           DGFYYA L K
Sbjct: 421 DGFYYAKLIK 430