Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., 16S rRNA m(5)C-967 methyltransferase from Pseudomonas syringae pv. syringae B728a

 Score =  416 bits (1068), Expect = e-120
 Identities = 226/435 (51%), Positives = 277/435 (63%), Gaps = 11/435 (2%)

Query: 1   MNVRAAAASALYQVVDLGHSLSNALPAAQQQIRPRDHALLQEICYGVLRQLPRLESISQA 60
           MN R AAA AL  V+    SL+++LP    ++  RD  L Q++ +G  R  PRL +++  
Sbjct: 1   MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEVRDRGLTQDLAFGTARWQPRLSALAAK 60

Query: 61  LMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLRN 120
           L+ KP K        L+LVGLYQL + RIPAHAA+GETV  A  LK P  +GL+NAVLRN
Sbjct: 61  LLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKPWAKGLLNAVLRN 120

Query: 121 YQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHH 180
            QRD E L  +       R  HP WL K LK ++PEQW+ I  ANN+  PM LRVN +HH
Sbjct: 121 AQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILRVNRRHH 180

Query: 181 TRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLA 240
            R +Y  LL+ AG+  +    ++D + L  PCDV  LPGFAEGW+SVQD AAQLA   L 
Sbjct: 181 RRDQYLELLDTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQLAADLLE 240

Query: 241 PQAGELILDCCAAPGGKTAHILERTPE-SQVVAIDCDETRLKRVRENLQRLELTAQVICG 299
              G+ +LD C APGGKT H+LE  P+   VVA+D +  RL RVRENL RL L A++I  
Sbjct: 241 LAPGQRVLDACCAPGGKTCHLLEVQPQLDGVVAVDLEAKRLVRVRENLDRLGLDAELIAA 300

Query: 300 DARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQ 359
           DAR   QWW G+ F RILLDAPCSATGVIRRHPDIK  R+ADDIAALA LQ E+LDA+W 
Sbjct: 301 DARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAALAALQGELLDALWP 360

Query: 360 QLKPGGSLVYATCSITPQENRLQVKAFLERTPDARL--VGSEPAQP--------GRQILP 409
            L+ GG LVYATCS  P EN   ++AFL RT  AR   +  +  QP        GRQ+L 
Sbjct: 361 TLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQAHGRQLLA 420

Query: 410 GEEAMDGFYYAVLSK 424
            +   DGFYYA L K
Sbjct: 421 QQGGHDGFYYAKLIK 435