Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., sun protein from Synechococcus elongatus PCC 7942

 Score =  244 bits (623), Expect = 4e-69
 Identities = 160/410 (39%), Positives = 223/410 (54%), Gaps = 27/410 (6%)

Query: 36  DHALLQEICYGVLRQLPRLESISQALMGKPLKGKQRVFHFLILVGLYQLSFM-RIPAHAA 94
           D  L+ E+ YG +R+   L+++   L  +P   +  V   ++ +GLYQL ++ +IP  AA
Sbjct: 43  DRRLVTELVYGCVRRQRTLDALIDLLAQRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAA 102

Query: 95  VGETVEGAQDLKGPRLRGLINAVLRNYQRDQEGLDAQATSHD-----AGRYGHPGWLLKL 149
           V ETV+ A+ L    L G +NA+LR Y R  E  D      D     A     P WL++L
Sbjct: 103 VAETVQLAKQLGLGGLSGAVNAILRQYLRQSEERDPLPLPSDPIAALAIHQSFPDWLVQL 162

Query: 150 LKESYP-EQWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCL 208
             +    ++ + +    N    + LR+N     R++ QA LE  GI +TP  Q   AL L
Sbjct: 163 WSDRLGLDEAEFLCHWFNQPPSIDLRINPLRTERSQVQAALEAVGIRSTPDPQLPQALRL 222

Query: 209 -ETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAHILERTPE 267
            + P  + QLPGF EGW  VQD++AQL    + PQ GE +LD CAAPGGK+ H+ E   +
Sbjct: 223 IDPPGPIRQLPGFDEGWWMVQDSSAQLIAHLVDPQPGETVLDVCAAPGGKSTHLAELMGD 282

Query: 268 -SQVVAIDCDETRLKRVRENLQRLEL---TAQVICGDARYPQQWWQGEQFDRILLDAPCS 323
             QV+A D    RL++V+EN QRL+L   T + I G      +  +G Q DRIL+DAPCS
Sbjct: 283 RGQVIACDSSAKRLRKVQENAQRLQLSSITTRAIDG------RQIKGIQADRILVDAPCS 336

Query: 324 ATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITPQENRLQV 383
             G + RH D +W +  D +A LA+LQ EILDA    LKP G+LVYATC++ P EN   +
Sbjct: 337 GLGTLHRHADGRWRQSPDSVAELAQLQSEILDAAAACLKPAGTLVYATCTLHPAENEAVI 396

Query: 384 KAFLERTPD---ARLVGSEPAQPGRQ------ILPGEEAMDGFYYAVLSK 424
           + FL+R PD   A L    P Q   +      I P     DGF+ A L +
Sbjct: 397 EQFLQRHPDWQMAPLAADSPFQAWAEANGTLRIWPHRHDRDGFFGARLQR 446