Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., sun protein from Sinorhizobium meliloti 1021

 Score =  184 bits (467), Expect = 5e-51
 Identities = 147/446 (32%), Positives = 213/446 (47%), Gaps = 43/446 (9%)

Query: 4   RAAAASALYQVVDLGHSLSNALPA-----AQQQIRPRDHALLQEICYGVLRQLPRLESIS 58
           R AAA  L  VVD    L   L       A +++   D AL++ I    LR LPR+ +  
Sbjct: 40  RQAAAKILAAVVDRKTPLDGMLDPERGNPAYRELSEADRALVRAILNSALRHLPRIRAAI 99

Query: 59  QALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQ-DLKGPRLRGLINAV 117
            +L+  PL    R    ++ V   Q+ ++ +P H+AV   VE AQ D +  R   L+NAV
Sbjct: 100 DSLLQTPLPEGARALEHVLTVAATQILYLDVPDHSAVDLAVEQAQSDPRNRRFASLVNAV 159

Query: 118 LRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESY-PEQWQQIVEANNSKAPMWLRVN 176
           LR   R++E +  +     A     PGW    L   Y P+Q ++I EA    A + L V 
Sbjct: 160 LRRLSREKEEILEKLRQVPA----MPGWFFDRLVACYGPDQAERISEAQLVPAAIDLTVK 215

Query: 177 HQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLAL 236
               + AE  A      ++ T   + +     E    +  L GF+EG   VQDAAA +  
Sbjct: 216 SDAASWAERLA----GTVLPTGSVRLQ-----EFSGSIPSLSGFSEGAWWVQDAAASIPA 266

Query: 237 TYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQV 296
                 +G+ ++D CAAPGGKTA ++     ++V A+D   +RL+R++ NL+RL   A+ 
Sbjct: 267 RLFGDISGKKVVDLCAAPGGKTAQLV--LAGAEVTALDQSSSRLRRLKANLERLGFEART 324

Query: 297 ICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDA 356
              D     ++   E FD  LLDAPCS+TG  RRHPD+ W +   D+  LA LQ  +L  
Sbjct: 325 KESDMA---EFRPEELFDAALLDAPCSSTGTTRRHPDVLWTKGPQDVEKLARLQERLLRH 381

Query: 357 MWQQLKPGGSLVYATCSITPQEN-----RLQVKAFLERTP-DA----------RLVGSEP 400
               +KPGG +V++ CS+ P E      R+   +  ER P DA            +G   
Sbjct: 382 ALTLVKPGGLIVFSNCSLDPLEGEEVVARVVADSGCERVPIDAADWPGLEKAITALGEFR 441

Query: 401 AQPGRQIL--PGEEAMDGFYYAVLSK 424
             P    L  P    +DGFY AVL +
Sbjct: 442 TTPAMLPLEPPFAGGLDGFYAAVLRR 467