Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., tRNA and rRNA cytosine-C5-methylase (RefSeq) from Shewanella amazonensis SB2B

 Score =  158 bits (399), Expect = 3e-43
 Identities = 101/288 (35%), Positives = 143/288 (49%), Gaps = 13/288 (4%)

Query: 141 GHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTPHA 200
           G P WL KL +    + W     A +     +LR N    TR E    L   G+ T P  
Sbjct: 135 GCPDWLDKLGQAELGDTWAAERAALSLAPKRYLRTNGLKCTRDELATRLAAEGVQTVPVD 194

Query: 201 QAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGGKTAH 260
             E AL + +   + +   FA+GW   QDA +QL    L  + G  ++D CA  GGKT H
Sbjct: 195 GVESALEVTSNAALFRTKAFADGWFEQQDAGSQLVAAALDVKPGMRVIDACAGAGGKTLH 254

Query: 261 ILER-TPESQVVAIDCDETRLKRVRENLQRL---ELTAQVICGDARYPQQWWQGEQFDRI 316
           +    T + +++A+D ++ +L  ++E  +R     +  ++I G     +        DR+
Sbjct: 255 LAAAMTGKGRLLAMDVEQWKLDNLKERARRAGAHNVETRLIAGSKTIKRLKLSA---DRL 311

Query: 317 LLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQQLKPGGSLVYATCSITP 376
           LLD PCS  GV++R+PD KW    + +  L ELQ  IL +  + +K GG LVYATCSI P
Sbjct: 312 LLDVPCSGLGVLKRNPDAKWRDTEERLPVLMELQAHILGSYSRMVKVGGILVYATCSIMP 371

Query: 377 QENRLQVKAFLERTPDARLVGSEPAQPGRQILPGEEAMDGFYYAVLSK 424
            ENR QV AFL   P+ RL+  E       I P     DGFY A L +
Sbjct: 372 CENRGQVDAFLAANPNFRLLEDE------NITPATSGFDGFYLAKLER 413