Pairwise Alignments

Query, 426 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., sun protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  453 bits (1166), Expect = e-132
 Identities = 242/430 (56%), Positives = 305/430 (70%), Gaps = 12/430 (2%)

Query: 1   MNVRAAAASALYQVVDLGHSLSNALPAAQQQIRP-RDHALLQEICYGVLRQLPRLESISQ 59
           MN+RA AA A++ V++ G SLS ALP  Q  +R  +D ALL EICYGV+R LP+L+ +  
Sbjct: 1   MNIRALAAKAIFDVLERGVSLSVALPTQQLWLRDGKDKALLAEICYGVMRSLPQLDKLVS 60

Query: 60  ALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPRLRGLINAVLR 119
             M KPLKGKQRV H L+LVG YQL F R+PAHAA+ ET EG + L    L  ++N VLR
Sbjct: 61  GYMQKPLKGKQRVVHQLLLVGAYQLYFTRVPAHAAISETAEGCRALGFESLVKVVNGVLR 120

Query: 120 NYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLRVNHQH 179
           N QR    LD    S+D  +Y  P W+++ LK++YPE W+ I+EA++ + PMWLR N +H
Sbjct: 121 NIQRQVPPLDE---SNDTLKYNFPAWIIRRLKDAYPETWENIIEASHQRPPMWLRNNRRH 177

Query: 180 HTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYL 239
            +R  Y   L  A  V+      EDA+CLE   DV +LP FA+G  SVQD AAQ A + L
Sbjct: 178 QSRDAYLQALSDAE-VSAVAGPGEDAICLEFATDVARLPHFADGASSVQDGAAQWAASLL 236

Query: 240 APQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTAQVICG 299
           AP+ GEL+LD CAAPGGK+ H+LE   + ++VA+D D+ RL+RV +NL+RL+L A+VI G
Sbjct: 237 APRDGELVLDACAAPGGKSCHLLELA-DIELVAVDFDQKRLERVSQNLERLKLDARVIHG 295

Query: 300 DARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDAMWQ 359
           DA     WWQG +FDRILLDAPCSATGVIRRHPDIKWLR+ +DIA LA+LQ++ILD  WQ
Sbjct: 296 DAGDIGSWWQGGKFDRILLDAPCSATGVIRRHPDIKWLRQNNDIAELAKLQQQILDNCWQ 355

Query: 360 QLKPGGSLVYATCSITPQENRLQVKAFLERTPDARLVGSEPAQP-----GRQILPGEEAM 414
            LKPGG+L+YATCSI P+ENR Q+KAFLERTPDA L  + P Q      G QILPG++ M
Sbjct: 356 WLKPGGTLLYATCSILPEENREQIKAFLERTPDATL-ETLPNQANNNDIGWQILPGQDDM 414

Query: 415 DGFYYAVLSK 424
           DGFYYA L K
Sbjct: 415 DGFYYARLKK 424